The establishment of a new high-throughput method for evaluating the methylation status of lung cancer gene
10.3760/cma.j.issn.1009-9158.2010.06.016
- VernacularTitle:新型高通量肺癌相关基因甲基化检测方法的建立
- Author:
Jiatao LOU
;
Jian XUE
;
Chuanyong WU
;
Xinyue GE
;
Jing WU
;
Jianer YAO
- Publication Type:Journal Article
- Keywords:
Lung neoplasms;
Genes,tumor suppressor;
Methylation;
Polymerase chain reaction;
Microchip analytical procedures
- From:
Chinese Journal of Laboratory Medicine
2010;33(6):548-553
- CountryChina
- Language:Chinese
-
Abstract:
Objective To explore a new high-throughput method with internal standards for analyzing the methylation profiles of lung cancer related genes. Methods The promoter sequences of 7 lung cancer related genes were cloned into plasmids and the target segments were amplified by their special primers respectively. The products were treated with M. Sss Ⅰ methylase and bisulfite. The multiplex ligation PCR method was established by designing probes containing CpGpCpG(for methylatedsequence) at the 3' ends and choosing the optimal ligation enzyme, annealing and ligation temperatures. The standard calibrators and clinic samples were tested by fluid chip platform. The results were validated by methylationspecific PCR. Results We successfully set up the standard calibrators for methylation and unmethylaiton of 7 lung cancer related genes and established a multiplex ligation PCR combined with fluid chip method, which was used to detect methylation status of 7 genes simultaneously. The fluorescence value of p16INK4A, APC,DAPK, RARIβ, RASSF1 A, MGMT and GSTP1 methylation standard calibrators were 863,909,703,701,901,1 060 and 885, much higher than that of unmethylation standard calibrators. The results were consistent with the results of methylation-specific PCP. ConclusionThe new high-throughput method can be used to evaluate the methylation status of 7 lung cancer related genes simultaneously and might be useful for clinical practice.
