Transcriptome-based bioinformatics analysis of Arnebia euchroma ERF transcription factor family.
- Author:
Teng XIE
;
Sheng WANG
;
Lei HUANG
;
Xue WANG
;
L-ping KANG
;
Lan-ping GUO
- Publication Type:Journal Article
- MeSH:
Amino Acid Motifs;
Amino Acid Sequence;
Boraginaceae;
genetics;
Cloning, Molecular;
Computational Biology;
Genome, Plant;
genetics;
High-Throughput Nucleotide Sequencing;
Medicine, Chinese Traditional;
Molecular Sequence Data;
Multigene Family;
Phylogeny;
Plant Proteins;
chemistry;
genetics;
Plants, Medicinal;
Protein Structure, Secondary;
Protein Structure, Tertiary;
Sequence Analysis, DNA;
Transcription Factors;
chemistry;
genetics;
Transcriptome
- From:
China Journal of Chinese Materia Medica
2014;39(24):4732-4739
- CountryChina
- Language:Chinese
-
Abstract:
Twenty-seven ERF transcription factor family genes were isolated from Arnebia euchroma, with an average size of 1,010 bp, each gene encoded a 212 amino acids on average. The gene structure and expression of physicochemical properties, subcellular localization, signal peptides, senior structural domains and conservative forecasting, and analysis of A. euchroma were studied comparing with ERF gene gi261363612 of Lithospermum erythrorhizon, and phylogenetic analysis of A. euchroma ERF family was carried out. The results showed the existence of three conserved domains in this family, the senior structure based on random coil and it clustered into CBF/DREB and ERF subfamilies.
