Inverse PCR amplification of the complete major capsid protein gene of lymphocystis disease virus isolated from Rachycentron canadum and the phylogenetic analysis of the virus.
- Author:
Xiao-Zhe FU
1
;
Cun-Bin SHI
;
Ning-Qiu LI
;
Hou-Jun PAN
;
Ou-Qin CHANG
;
Shu-Qin WU
Author Information
1. Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510380, China.
- Publication Type:Journal Article
- MeSH:
Animals;
Base Sequence;
Capsid Proteins;
genetics;
Iridoviridae;
classification;
genetics;
Molecular Sequence Data;
Perciformes;
microbiology;
Phylogeny;
Polymerase Chain Reaction;
methods
- From:
Chinese Journal of Virology
2007;23(5):412-416
- CountryChina
- Language:Chinese
-
Abstract:
The major capsid protein of lymphocystis disease virus isolated from Rachycentron canadum (LCDV-rc) was amplified and analysed. The 457bp DNA core fragment was amplified with the degenerate primers designed according to the conserved sequences of MCP gene of iridoviruses, then the flaking sequences adjacent to the core region were amplified by inverse PCR, and the complete sequence was obtained by combining all of them. The open reading frame of the gene is 1380bp in length, encoding a putative protein of 459 aa with molecular weight 51.12 kD and pI 6.87. Constructing the phylogenetic tree for comparing the MCP amino acid of iridoviruses, the results indicated that LCDV-rc is most homologous to the other Lymphocystis viruses and all of them constitute a branch. Accordingly LCDV-rc is identified as Lymphocystivirus.
