Sequencing and analysis of the complete genome of a rabies virus isolate from Sika deer.
- Author:
Yun-Jiao ZHAO
1
;
Li GUO
;
Ying HUANG
;
Li-Shi ZHANG
;
Ai-Dong QIAN
Author Information
1. College of Animal Science and Technology, Jilin Agricultural University, Changchun 130118, China. zhyj1970@yahoo.com.cn
- Publication Type:Journal Article
- MeSH:
Amino Acid Sequence;
Animals;
Base Sequence;
DNA, Complementary;
chemistry;
genetics;
Deer;
virology;
Genome, Viral;
Molecular Sequence Data;
Phylogeny;
Rabies;
virology;
Rabies virus;
classification;
genetics;
isolation & purification;
Reverse Transcriptase Polymerase Chain Reaction;
Sequence Analysis, DNA;
Sequence Homology, Amino Acid;
Viral Proteins;
genetics
- From:
Chinese Journal of Virology
2008;24(3):227-233
- CountryChina
- Language:Chinese
-
Abstract:
One DRV strain was isolated from Sika Deer brain and sequenced. Nine overlapped gene fragments were amplified by RT-PCR through 3'-RACE and 5'-RACE method, and the complete DRV genome sequence was assembled. The length of the complete genome is 11863bp. The DRV genome organization was similar to other rabies viruses which were composed of five genes and the initiation sites and termination sites were highly conservative. There were mutated amino acids in important antigen sites of nucleoprotein and glycoprotein. The nucleotide and amino acid homologies of gene N, P, M, G, L in strains with completed genomie sequencing were compared. Compared with N gene sequence of other typical rabies viruses, a phylogenetic tree was established . These results indicated that DRV belonged to gene type 1. The highest homology compared with Chinese vaccine strain 3aG was 94%, and the lowest was 71% compared with WCBV. These findings provided theoretical reference for further research in rabies virus.
