Cloning and analysis of reverse transcriptase(RT) of Ty1-copia retrotransposons in Dendrobium officinale.
- Author:
Cong LI
;
Jin-Ping SI
;
Yan-Hui GAO
;
Yu-Qiu ZHU
- Publication Type:Journal Article
- MeSH:
Amino Acid Sequence;
Cloning, Molecular;
Conserved Sequence;
DNA, Plant;
genetics;
Dendrobium;
enzymology;
genetics;
Molecular Sequence Data;
Phylogeny;
RNA-Directed DNA Polymerase;
chemistry;
genetics;
Retroelements;
genetics;
TATA Box;
genetics
- From:
China Journal of Chinese Materia Medica
2014;39(2):209-215
- CountryChina
- Language:Chinese
-
Abstract:
Using universal primer Ty1-copia retrotransposon RT,43 Ty1-copia like retrotransposon RT with high heterogeneity, stop codon mutation and frameshift mutation were amplified by PCR from genomic DNA of Zhejiang Lin'an (C15) and Yunnan Guangnan (A39) of Dendrobium officinale. The length of these sequences varied from 260 to 266 bp, and was rich in AT and consistency ranged from 47.1% to 97.7%. Different c/s-acting regulatory elements induced by low temperature, heat, light, all kinds of plant growth regulating substances and the starting transcription signals, corresponding to CAAT box, TATA box conserved sequences and some other regulatory elements. When being translated into amino acids, ten sequences presented stop codon mutation, five sequences presented frameshift mutation, and thirty-seven sequences presented conserved sequence "SLYGKQ" mutation. Six categories were identified through phylogenic analysis after alignment analyses of their amino acid sequences, and with other plants (eg. Triticum aestivum, Eleocharis quinqueflora) having high homology, which indicated that horizontal transmission of retrotransposon occurred among the plants in the past.
