Screening and identification of genes trans-regulated by a novel HbeAg interacting protein AK026018 with microarray assay.
- Author:
Bo-an LI
1
;
Jun HOU
;
Wei-ping HE
;
Yang QI
;
Shu-ping CHI
;
Jun ZHAO
;
Yun CHENG
Author Information
- Publication Type:Journal Article
- MeSH: Carrier Proteins; genetics; metabolism; physiology; Cell Line, Tumor; Computational Biology; Gene Expression Regulation, Neoplastic; Hepatitis B e Antigens; metabolism; Humans; Oligonucleotide Array Sequence Analysis; methods; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; Transfection
- From: Chinese Journal of Experimental and Clinical Virology 2006;20(2):46-48
- CountryChina
- Language:Chinese
-
Abstract:
BACKGROUNDTo investigate the biological functions of a novel hepatitis B virus e antigen (HbeAg) interacting protein AK026018, and to use cDNA microarray technique to screen genes regulated by the protein.
METHODSThe AK026018 coding DNA fragment was amplified by reverse transcription polymerase chain reaction (RT-PCR) technique from HepG2 cell. The expressive vector of pcDNA3.1-AK was constructed by routine molecular biological methods. The HepG2 cells were transfected with pcDNA3.1 and pcDNA3.1-AK, respectively by using lipofectamine. The total RNA was isolated and reverse transcribed. The cDNA of each sample was subjected to microarray screening with 8,464 cDNA probes and analyzed by bioinformatics.
RESULTSThe expressive vector was constructed and confirmed by DNA sequencing analysis and restriction enzyme digestion. High quality mRNA and cDNA of transfected HepG2 cells had been prepared and successful microarray screening conducted. From the scanning results, there were 122 differential expression genes, of which 36 genes were down-regulated, and 16 genes were up-regulated.
CONCLUSIONMicroarray technique was successfully used to screen the genes trans-regulated by AK026018. The expression of AK026018 protein affects the expression spectrum of HepG2 cells.
