Application of nested PCR and sequencing technique to detect point mutations of the 23S rRNA gene of Mycoplasma pneumoniae.
- Author:
De-li XIN
1
;
Zu-huang MI
;
Xu HAN
;
Ling QIN
;
Jing LI
;
Xi-jie LIU
;
Shao-jie MA
;
An-cun HOU
;
Gui LI
Author Information
- Publication Type:Journal Article
- MeSH: Adolescent; Child; Child, Preschool; Drug Resistance, Bacterial; Female; Genes, rRNA; Humans; Infant; Male; Microbial Sensitivity Tests; Mycoplasma pneumoniae; genetics; isolation & purification; Point Mutation; Polymerase Chain Reaction; RNA, Bacterial; genetics; RNA, Ribosomal, 23S; genetics
- From: Chinese Journal of Pediatrics 2008;46(7):522-525
- CountryChina
- Language:Chinese
-
Abstract:
OBJECTIVETo establish a quick method to detect drug resistance of Mycoplasma pneumoniae (MP) and study the condition of drug resistance in MP infection.
METHODSMP 23S rRNA target gene in throat swab specimens from 200 patients with suspected MP infection was detected by using nested PCR and DNA sequencing. The result of 23S rRNA gene detection was confirmed by MP isolation and drug susceptibility test in vitro for reliability.
RESULTSOf the 200 clinical specimens, 64 were proved to be positive for MP through MP-IgM antibody, MP specific 16S rRNA nested PCR and MP isolation . The 23S rRNA gene was amplified and the gene sequence was compared with MP reference strain in Genbank, 26 were identical to the reference strain, 38 had a point mutation in 23S rRNA. Among them, 35 had A to G mutation at position 2063, 1 had A to C mutation at position 2063 and 2 had A to G mutation at position 2064, the percentage of drug resistance was 59.4%. The sensitivity of the gene detection method was 10(2) ccu/ml and it was confirmed to be reliable by MP isolation and drug susceptibility test.
CONCLUSIONSThe gene detection method could detect MP drug resistant gene directly from clinical specimen, which has the advantages of high specificity, high sensitivity and quickness. It is of great significance for diagnosis of MP infection because MP isolation is difficult and time-consuming.
