Rapid detection of norwalk GII with reverse transcription loop-mediated isothermal amplification.
- Author:
Ke-Yun SONG
1
;
Ru-Sheng ZHANG
;
Xin-Hua OU
;
Su-Liang
;
Qiu-Lin YANG
Author Information
1. Center for Disease Control and Prevention of Chang Sha, Changsha 410001, China. songkeyun2003@yahoo.com.cn
- Publication Type:Journal Article
- MeSH:
Caliciviridae Infections;
virology;
Feces;
virology;
Humans;
Norwalk virus;
genetics;
isolation & purification;
RNA Replicase;
genetics;
Reverse Transcriptase Polymerase Chain Reaction;
methods;
Viral Proteins;
genetics
- From:
Chinese Journal of Virology
2009;25(4):291-295
- CountryChina
- Language:Chinese
-
Abstract:
To develop a reverse transcription-loop-mediated isothermal amplification (RT-LAMP) assay for rapid and sensitive detection of Norwalk GII. 4 primers which recognized 6 distinct regions on the RNA-dependent RNA polymerase gene of Norwalk GII were designed and used for LAMP assay. Norwalk GII RNA was amplified under isothermal conditions (65 degrees C) for 120 min, and LAMP results were then judged with naked eye, SYBR Green I staining, electrophoretic analysis and restriction digestion. To evaluate the specificity of the RT-LAMP, 48 fecal specimens of Norwalk GII and 12 fecal specimens of group A rotaviruses were tested. To compare the sensitivity of the RT-LAMP with that of conventional RT-PCR, Norwalk GII RNA was serially diluted and amplified by RT-LAMP and RT-PCR, respectively. With 46 fecal specimens of Norwalk GII, observation with naked eyes, SYBR Green I staining and electrophoretic analysis were able to detect the PCR products in the RT-LAMP assay. The specificity of RT-LAMP products was also confirmed by digestion of the RT-LAMP products with restriction enzymes. No RNA amplification was observed in 2 fecal specimens of Norwalk GII and 12 fecal specimens of group A rotaviruses. The specificity of the RT-LAMP assay with regard to RT-PCR were 100% for Norwalk GII. The detection limits of RT-LAMP was 15.6 pg/tube for Norwalk GII and similar to that of a RT-PCR assay. Compared to RT-PCR, the RT-LAMP assay has been proven to be a rapid, sensitive, specific and accurate method for detection of the Norwalk GII in fecal specimens, and that RT-LAMP assay is potentially useful for the rapid detection of Norwalk GII from fecal specimens in outbreaks of infectious diarrhea.
