Analysis of HLA-A, B, and DRB1 polymorphism and genetic distance in Han population living in Yantai and Weihai regions of Shandong province.
- Author:
Yi ZHANG
1
;
Yun-long ZHUANG
;
Xiang-min NIE
;
Yan LIU
;
Yong-hong SONG
;
Guang-chen WANG
;
Chuan-fu ZHU
Author Information
- Publication Type:Journal Article
- MeSH: Asian Continental Ancestry Group; genetics; Female; Gene Frequency; HLA-A Antigens; genetics; HLA-B Antigens; genetics; HLA-DRB1 Chains; genetics; Haplotypes; Humans; Linkage Disequilibrium; Male; Phylogeny; Polymorphism, Genetic
- From: Chinese Journal of Medical Genetics 2012;29(2):229-233
- CountryChina
- Language:Chinese
-
Abstract:
OBJECTIVETo investigate allelic and haplotypic polymorphisms of human leukocyte antigen(HLA) genes at A, B and DRB1 loci in Yantai and Weihai Han population and analyze the genetic relationship between Yantai, Weihai Han population and other populations.
METHODSA total of 4062 unrelated Han ethnic individual from Yantai and Weihai regions were genotyped by polymerase chain reaction-sequence specific olignucleotide probe(PCR-SSOP) for HLA-A, B and DRB1 loci. Allelic and haplotypic frequencies were estimated by maximum likelihood estimation method using Arlequin 3.5 software. Genetic distances were computed, and phylogenetic tree was constructed using Mega5.0 software.
RESULTSRespectively 18, 33 and 13 alleles were observed at HLA-A, B and DRB1 loci. The most frequent alleles were HLA-A*02(0.2935), HLA-B*15(0.1485) and HLA-DRB1*15(0.1621). And the most common three loci haplotype was A*30-B*13-DRB1*07(0.0649). A*33-B*58, A*66-DRB1*13 and B*08-DRB1*03 showed the strongest linkage disequilibrium. Yantai and Weihai Han population has the shortest genetic distance with Jilin Han population (0.0034).
CONCLUSIONThe HLA-A, B and DRB1 loci are highly polymorphic in Han population from Yantai and Weihai, and this population has closest relationship with Han population from Jilin province.
