Application of screening microarray technology in genus level for detection of Pospiviroid.
- Author:
Yongjiang ZHANG
;
Yanyan XIN
;
Shuifang ZHU
;
Congliang DENG
- Publication Type:Journal Article
- MeSH:
Base Composition;
Base Sequence;
Microarray Analysis;
Nucleic Acid Hybridization;
Plant Diseases;
virology;
Plant Viruses;
classification;
RNA;
Viroids;
classification
- From:
Chinese Journal of Biotechnology
2014;30(3):514-523
- CountryChina
- Language:Chinese
-
Abstract:
The aim was to establish an effective screening microarray at genus level for Pospiviroid. We analyzed nucleotide sequences from Pospiviroid viroid and designed 19 probes with genus identification characteristics. The standards of these probes included the characters of (i) a GC content between 40 and 60%, (ii) less than 50% of single nucleotide, (iii) less than 4 continuous mononucleotides, and (iv) less than 6 nucleotides in the inner hairpin. We synthesized microarrays by using these probes on glass slides. The validation results of microarray probes show effective signals from chrysanthemum stunt viroid and tomato planta macho viroid standard samples hybridization. The sensitivity results show that the microarray detected 200 pg/microL of total RNA. The microarray can be used to screen Pospiviroid viroid.
