Cluster ensemble algorithm based on dual neural gas applied to cancer gene expression profiles.
- Author:
Xiaodong ZHANG
;
Hantao CHEN
- Publication Type:Journal Article
- MeSH:
Algorithms;
Cluster Analysis;
Gene Expression Profiling;
methods;
Humans;
Neoplasms;
genetics;
Transcriptome
- From:
Journal of Biomedical Engineering
2015;32(1):93-98
- CountryChina
- Language:Chinese
-
Abstract:
The microarray technology used in biological and medical research provides a new idea for the diagnosis and treatment of cancer. To find different types of cancer and to classify the cancer samples accurately, we propose a new cluster ensemble framework Dual Neural Gas Cluster Ensemble (DNGCE), which is based on neural gas algorithm, to discover the underlying structure of noisy cancer gene expression profiles. This framework DNGCE applies the neural gas algorithm to perform clustering not only on the sample dimension, but also on the attribute dimension. It also adopts the normalized cut algorithm to partition off the consensus matrix constructed from multiple clustering solutions. We obtained the final accurate results. Experiments on cancer gene expression profiles illustrated that the proposed approach could achieve good performance, as it outperforms the single clustering algorithms and most of the existing approaches in the process of clustering gene expression profiles.
