Rapid detection of MDR-Mycobacterium tuberculosis using modified PCR-SSCP from clinical Specimens.

Imani Fooladi Abbas Ali; Farzam Babak; Mousavi Seyed Fazlollah; Jonaidi Jafari Nematollah

Return

Rapid detection of MDR-Mycobacterium tuberculosis using modified PCR-SSCP from clinical Specimens.

Author: Imani Fooladi Abbas ALI ¹ ; Farzam BABAK ² ; Mousavi Seyed FAZLOLLAH ³ ; Jonaidi Jafari NEMATOLLAH ⁴
Author Information

1. Applied Microbiology, Research Center, Baqiyatallah University Of Medical Sciences, Tehran, Iran.
2. Department of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
3. Department of Bacteriology and Research Center of Microbiology, Pasteur Institute of Iran, Tehran, Iran.
4. Health Research Center, Baqiyatallah University of Medical Sciences, Tehran, Iran.
Publication Type:Journal Article
Keywords: Drug resistance; Mycobacterium tuberculosis; PCR-SSCP; Phenotypic method; katG; rpoB
From:Asian Pacific Journal of Tropical Biomedicine 2014;4(Suppl 1):S165-70
CountryChina
Language:English
Abstract:
OBJECTIVETo design a rapid test to detect the rifampin (RIF) and isoniazid (INH) resistant mutant based on polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP) technique that analyzes the katG, rpoB genes.
METHODSBiochemical test as well as IS6110 targeting PCR revealed 103 clinical samples were tuberculosis. To determine the susceptibility of isolates to anti TB drugs, the proportional method was used. Mutations presented within the amplified products of the katG, rpoB genes were evaluated by SSCP.
RESULTSUsing proportional method, 12 (11.6%) and 9 (8.7%) isolates were resistant respectively to INH and RIF and 9 (8.7%) isolates showed resistance to both drug (multi-drug resistant tuberculosis). Three (2.9%) multi-drug resistant tuberculosis and two INH resistant isolates were detected by the PCR-SSCP and sequencing. The sensitivity and specificity of PCR-SSCP for multi-drug resistant isolates were 33% and 100%, respectively.
CONCLUSIONSComplete agreement between SSCP and sequencing can indicate that resistance-associated mutations have occurred in other genes except our considered genes.