Targeted resequencing of candidate genes reveals novel variants associated with severe Behcet's uveitis.
- Author:
Sang Jin KIM
1
;
Seungbok LEE
;
Changho PARK
;
Jeong Sun SEO
;
Jong Il KIM
;
Hyeong Gon YU
Author Information
1. Department of Ophthalmology, Seoul National University College of Medicine, Seoul, South Korea. hgonyu@snu.ac.kr
- Publication Type:Original Article ; Research Support, Non-U.S. Gov't
- Keywords:
Behcet's disease;
next-generation sequencing;
uveitis
- MeSH:
Adult;
Aged;
Behcet Syndrome/*genetics;
Case-Control Studies;
Female;
Histocompatibility Antigens Class I/genetics;
Humans;
Intercellular Adhesion Molecule-1/genetics;
Interferon-alpha/genetics;
Male;
Middle Aged;
*Polymorphism, Single Nucleotide;
Receptors, IgG/genetics;
Receptors, KIR/genetics;
Receptors, KIR2DL4/genetics
- From:Experimental & Molecular Medicine
2013;45(10):e49-
- CountryRepublic of Korea
- Language:English
-
Abstract:
Behcet's disease (BD) is a chronic systemic inflammatory disorder characterized by four major manifestations: recurrent uveitis, oral and genital ulcers and skin lesions. To identify some pathogenic variants associated with severe Behcet's uveitis, we used targeted and massively parallel sequencing methods to explore the genetic diversity of target regions. A solution-based target enrichment kit was designed to capture whole-exonic regions of 132 candidate genes. Using a multiplexing strategy, 32 samples from patients with a severe type of Behcet's uveitis were sequenced with a Genome Analyzer IIx. We compared the frequency of each variant with that of 59 normal Korean controls, and selected five rare and eight common single-nucleotide variants as the candidates for a replication study. The selected variants were genotyped in 61 cases and 320 controls and, as a result, two rare and seven common variants showed significant associations with severe Behcet's uveitis (P<0.05). Some of these, including rs199955684 in KIR3DL3, rs1801133 in MTHFR, rs1051790 in MICA and rs1051456 in KIR2DL4, were predicted to be damaging by either the PolyPhen-2 or SIFT prediction program. Variants on FCGR3A (rs396991) and ICAM1 (rs5498) have been previously reported as susceptibility loci of this disease, and those on IFNAR1, MTFHR and MICA also replicated the previous reports at the gene level. The KIR3DL3 and KIR2DL4 genes are novel susceptibility genes that have not been reported in association with BD. In conclusion, this study showed that target enrichment and next-generation sequencing technologies can provide valuable information on the genetic predisposition for Behcet's uveitis.
