Gene-Gene Interaction Analysis for the Accelerated Failure Time Model Using a Unified Model-Based Multifactor Dimensionality Reduction Method.
- Author:
Seungyeoun LEE
1
;
Donghee SON
;
Wenbao YU
;
Taesung PARK
Author Information
- Publication Type:Original Article
- Keywords: accelerated failure time model; gene-gene interaction; multifactor dimensionality reduction method; survival phenotype
- MeSH: Classification; Genome-Wide Association Study; Genotype; Methods*; Multifactor Dimensionality Reduction*; Phenotype
- From:Genomics & Informatics 2016;14(4):166-172
- CountryRepublic of Korea
- Language:English
- Abstract: Although a large number of genetic variants have been identified to be associated with common diseases through genome-wide association studies, there still exits limitations in explaining the missing heritability. One approach to solving this missing heritability problem is to investigate gene-gene interactions, rather than a single-locus approach. For gene-gene interaction analysis, the multifactor dimensionality reduction (MDR) method has been widely applied, since the constructive induction algorithm of MDR efficiently reduces high-order dimensions into one dimension by classifying multi-level genotypes into high- and low-risk groups. The MDR method has been extended to various phenotypes and has been improved to provide a significance test for gene-gene interactions. In this paper, we propose a simple method, called accelerated failure time (AFT) UM-MDR, in which the idea of a unified model-based MDR is extended to the survival phenotype by incorporating AFT-MDR into the classification step. The proposed AFT UM-MDR method is compared with AFT-MDR through simulation studies, and a short discussion is given.
