Methylation Profiles of CpG Island Loci in Major Types of Human Cancers.
10.3346/jkms.2007.22.2.311
- Author:
Seog Yun PARK
1
;
Baek Hee KIM
;
Jeong Ho KIM
;
Nam Yun CHO
;
Minhee CHOI
;
Eun Joo YU
;
Sun LEE
;
Gyeong Hoon KANG
Author Information
1. Department of Pathology, Seoul National University Hospital, 28 Yeongeon-dong, Jongno-gu, Seoul, Korea. ghkang@snu.ac.kr
- Publication Type:Original Article ; Research Support, Non-U.S. Gov't
- Keywords:
Carcinomas;
CpG Island;
DNA Methylations;
Tumor Suppressor Gene
- MeSH:
Quantitative Trait Loci/*genetics;
Polymerase Chain Reaction;
Neoplasms/*genetics;
Humans;
Genetic Predisposition to Disease/genetics;
Gene Frequency/genetics;
DNA, Neoplasm/*genetics;
*DNA Methylation;
CpG Islands/*genetics;
Chromosome Mapping/*methods
- From:Journal of Korean Medical Science
2007;22(2):311-317
- CountryRepublic of Korea
- Language:English
-
Abstract:
Several reports have described aberrant methylation in various types of human cancers. However, the interpretation of methylation frequency in various human cancers has some limitations because of the different materials and methods used for methylation analysis. To gain an insight into the role of DNA hypermethylation in human cancers and allow direct comparison of tissue specific methylation, we generated methylation profiles in 328 human cancers, including 24 breast, 48 colon, 61 stomach, 48 liver, 37 larynx, 24 lung, 40 prostate, and 46 uterine cervical cancer samples by analyzing CpG island hypermethylation of 13 genes using methylation-specific PCR. The mean numbers of methylated genes were 6.5, 4.4, 3.6, 3.4, 3.1, 3.1, 3.1, and 2.1 in gastric, liver, prostate, larynx, colon, lung, uterine cervix, and in breast cancer samples, respectively. The number of genes that were methylated at a frequency of more than 40% in each tumor type ranged from nine (stomach) to one (breast). Generally genes frequently methylated in a specific cancer type differed from those methylated in other cancer types. The findings indicate that aberrant CpG island hypermethylation is a frequent finding in human cancers of various tissue types, and each tissue type has its own distinct methylation pattern.
