Quantitative PCR for Etiologic Diagnosis of Methicillin-Resistant Staphylococcus aureus Pneumonia in Intensive Care Unit.
10.4046/trd.2012.72.3.293
- Author:
Sun Jung KWON
1
;
Taehyeon JEON
;
Dongwook SEO
;
Moonjoon NA
;
Eu Gene CHOI
;
Ji Woong SON
;
Eun Hyung YOO
;
Chang Gyo PARK
;
Hoi Young LEE
;
Ju Ock KIM
;
Sun Young KIM
;
Jaeku KANG
Author Information
1. Myunggok Medical Research Institute, Konyang University College of Medicine, Daejeon, Korea. jaeku@konyang.ac.kr sykim@cnu.ac.kr
- Publication Type:Original Article
- Keywords:
Methicillin-Resistant Staphylococcus aureus;
Real-Time Polymerase Chain Reaction;
Pneumonia, Ventilator-Associated
- MeSH:
Adenosine;
Bronchoalveolar Lavage;
Coat Protein Complex I;
DNA;
Humans;
Critical Care;
Intensive Care Units;
Limit of Detection;
Methicillin Resistance;
Methicillin-Resistant Staphylococcus aureus;
Pneumonia;
Pneumonia, Ventilator-Associated;
Polymerase Chain Reaction;
Real-Time Polymerase Chain Reaction;
Sprains and Strains;
Stem Cells
- From:Tuberculosis and Respiratory Diseases
2012;72(3):293-301
- CountryRepublic of Korea
- Language:English
-
Abstract:
BACKGROUND: Ventilator-associated pneumonia (VAP) requires prompt and appropriate treatment. Since methicillin-resistant Staphylococcus aureus (MRSA) is a frequent pathogen in VAP, rapid identification of it, is pivotal. Our aim was to evaluate the utility of quantitative polymerase chain reaction (qPCR) as a useful method for etiologic diagnoses of MRSA pneumonia. METHODS: We performed qPCR for mecA, S. aureus-specific femA-SA, and S. epidermidis-specific femA-SE genes from bronchoalveolar lavage or bronchial washing samples obtained from clinically-suspected VAP. Molecular identification of MRSA was based on the presence of the mecA and femA-SA gene, with the absence of the femA-SE gene. To compensate for the experimental and clinical conditions, we spiked an internal control in the course of DNA extraction. We estimated number of colony-forming units per mL (CFU/mL) of MRSA samples through a standard curve of a serially-diluted reference MRSA strain. We compared the threshold cycle (Ct) value with the microbiologic results of MRSA. RESULTS: We obtained the mecA gene standard curve, which showed the detection limit of the mecA gene to be 100 fg, which corresponds to a copy number of 30. We chose cut-off Ct values of 27.94 (equivalent to 1x10(4) CFU/mL) and 21.78 (equivalent to 1x10(5) CFU/mL). The sensitivity and specificity of our assay were 88.9% and 88.9% respectively, when compared with quantitative cultures. CONCLUSION: Our results were valuable for diagnosing and identifying pathogens involved in VAP. We believe our modified qPCR is an appropriate tool for the rapid diagnosis of clinical pathogens regarding patients in the intensive care unit.
