Value of nodal integrated topological attributes based on machine learning model in identifying schizophrenia
10.3760/cma.j.cn115354-20240708-00400
- VernacularTitle:基于机器学习模型探索节点综合拓扑属性在精神分裂症研究中的应用价值
- Author:
Yangyang LIU
1
;
Shuaiqi ZHANG
;
Pei LIU
;
Ningning DING
;
Haisan ZHANG
Author Information
1. 新乡医学院医学工程学院，新乡 453003
- Keywords:
Schizophrenia;
Machine learning model;
Data dimensional reduction;
Nodal integrated topological attribute
- From:
Chinese Journal of Neuromedicine
2024;23(7):705-710
- CountryChina
- Language:Chinese
-
Abstract:
Objective:To explore the value of nodal integrated topological attributes (NITA) based on machine learning model in identifying schizophrenia.Methods:A total of 56 patients with first-onset schizophrenia admitted to Department of Psychiatry, Second Affiliated Hospital of Xinxiang Medical University from January 2022 to August 2023 and 56 healthy volunteers recruited from community were selected. Functional MRI data were collected, and brain functional networks were constructed after preprocessing. Global and nodal topological attributes were extracted using graph theory as training features. Participants were divided into training set (46 schizophrenia patients and 46 heathy volunteers) and testing set (10 schizophrenia patients and 10 heathy volunteers). Random Forest Classifier (RFC), Support Vector Machine (SVM), and Gradient Boosting Tree (XGBoost) models were fitted to global and nodal topological attributes in the training set to calculate the accuracy, recall rate, F1 value, and area under receiver operating characteristic curve (AUC) of each model. Generalization ability was analyzed based on the performance of testing set, and excellent topological attributes were screened out. Selected topological attributes were reduced to one-dimensional features through principal component analysis,and then fitted to the above models, and feature-adapted model was selected based on the performances of training and testing sets. Statistical analysis of the new dimensional features of each brain region of schizophrenia patients and heathy volunteers was performed. Combined with false discovery rate (FDR), new dimension features with significant differences were selected and fitted with the adapted model.Results:In the training set, machine learning models using node topological attributes achieved higher accuracy, recall rate, F1 scores, and AUC compared with those using global topological attributes. In the test set, the SVM model using node topological attributes showed stable generalizability (accuracy=75.00%, recall rate=100.00%, F1 score=0.80, AUC=0.92). The node topological attribute metrics were down-dimensionally named NITA. Based on validation results of SVM model using NITA in the training set (accuracy of 77.00%, recall of 72.00%, F1 value of 0.76, AUC of 0.86) and performance in the testing set (accuracy of 66.67%, recall of 83.33%, F1 value of 0.71, AUC of 0.61), SVM was selected as the adapted model. NITA in the right middle frontal gyrus ventrolateral area, left inferior frontal gyrus dorsal area, right precentral gyrus caudal ventrolateral area, left superior temporal gyrus rostral area, right fusiform gyrus lateroventral area, right inferior parietal lobule rostrodorsal area, left occipital polar cortex showed significant difference between patients and volunteers ( P<0.05, FDR-corrected). The optimal model (FDR-PCAN-SVM) obtained via NITA being trained on corresponding brain area reached an accuracy of 93.74%, recall rate of 98.00%, F1 value of 0.94, and AUC of 0.96 in the training set and accuracy of 83.33%, recall rate of 66.67%, F1 value of 0.80, and AUC of 0.92 in the testing set. Conclusion:NITA may serve as a potential image biomarker for schizophrenia identification; brain regions with abnormal NITA is key nodes in information exchange and integration within the brain networks in schizophrenia patients.
