Genotyping analysis of norovirus infectious diarrhea clusters in Songjiang district, Shanghai from 2017 to 2019
10.3760/cma.j.cn112150-20210907-00878
- VernacularTitle:2017—2019年上海市松江区诺如病毒感染性腹泻疫情的病毒基因型特征分析
- Author:
Xuefei QIAO
1
;
Ling LIU
;
Jianhao WU
;
Meng LI
;
Jiali YU
;
Xin LI
;
Xihong LYU
;
Jiajin WU
Author Information
1. 上海市松江区疾病预防控制中心 201620
- Keywords:
Diarrhea;
Genotype;
Cross-sectional studies;
Norovirus
- From:
Chinese Journal of Preventive Medicine
2021;55(11):1316-1320
- CountryChina
- Language:Chinese
-
Abstract:
Objective:We aimed to analyze the the genotyping of norovirus infectious diarrhea epidemic in Songjiang district, Shanghai, and explored the experience in handling the epidemic to provide a scientific basis for formulating prevention and treatment strategies.Methods:The epidemiological data and related samples of 69 outbreaks of infectious diarrhea caused by norovirus was collected from 2017 to 2019 in Songjiang district, Shanghai. Sequencing and type identification were performed by the method of gene sequencing for the junction region of Norovirus ORF1 and ORF2.Results:From 2017 to 2019, 69 outbreaks of norovirus infections diarrhea were reported in Songjiang district, Shanghai. A total of 1 767 samples were tested, including 619 case samples (positive rate 19.9%), 343 practitioner samples (positive rate 1.1%), 505 environmental samples (positive rate 0.5%) and 300 food samples (not detected). 141 sequences were obtained, and the genotype analysis showed that the genotype that mainly caused infectious diarrhea in 2017 and 2018 was GII.P16-GII.2 (50.98%, 26/51). In 2019, the genotypes that mainly caused infectious diarrhea were GII.P16-GII.2 (13.73%, 7/51) and GII.Pe-GII.4 (9.80%, 5/51).Conclusion:The main genotype of the 69 outbreaks of nororirus infectious diarrhea epidemic in Songjiang district, Shanghai from 2017 to 2019 was GII.P16-GII.2, which showed obvious peaks in spring, autumn and winter. There were more infections in kindergartens and schools. The surveillance of norovirus infection should be strengthened.
