Protein-based Bioinformatics Analysis of Cervical Cancer Related Genes
10.3969/j.issn.1673-6036.2023.12.008
- VernacularTitle:基于蛋白的宫颈癌相关基因生物信息学分析
- Author:
Lingjing CHENG
1
;
Hetong LI
;
Shengxiao ZHANG
;
Hongqi LIU
;
Qi YU
;
Chaoyue ZHENG
;
Shuang FENG
;
Teng KONG
;
Xiangfei SUN
;
Peifeng HE
;
Xiaoping LYU
Author Information
1. 山西医科大学管理学院 太原 030001
- Keywords:
cervical cancer;
cervical tissue;
differentially expressed genes;
HPV E6/E7 encoded protein
- From:
Journal of Medical Informatics
2023;44(12):47-54
- CountryChina
- Language:Chinese
-
Abstract:
Purpose/Significance To explore the characteristics and clinical significance of differentially expressed genes closely re-lated to HPV E6/E7 by using bioinformatics.Method/Process The cervical tissue and clinical information of cervical cancer in TCGA and GTEx of UCSC are used as the training set.The expression profile chip GSE63514 related to cervical cancer in GEO is used as the validation set.Firstly,the limma package of R software is used to screen DEGs of tumor and normal samples,and Venn map of genes re-lated to E6/E7 protein in MigDB is made.Survival analysis is performed by survival kit and verified by ROC and protein expression lev-els.Secondly,key genes are obtained by copy number variation and methylation correlation.Finally,the specific co-expression network is constructed and enrichment analysis and immune infiltration analysis are performed.Result/Conclusion There are 101 differentially expressed genes related to HPV E6/E7 protein,and three genes are found to have significance after screening,namely E2F1,MCM4 and PCNA.At the same time,it is found that the genes in the specific coexpression network are significantly enriched in the DNA replication and chromosome organization pathways.Immune correlation analysis shows that key genes are significantly associated with CD4 T cells,B cells and neutrophils.DNA replication,chromosome organization,etc.,are the molecular mechanisms and key genes significantly related to the development of cervical squamous cell carcinoma and HPV E6/E7 encoded proteins.
