Mechanism of Polygonum capitatum in treatment of Helicobacter Pylori associated gastritis by network pharmacology, microarray data analysis and molecular docking

Yan Yuan; Ye Yang; Jiao-yan Yan; Min Liu; Fei MO; Shu Zhang; Yan Yuan; Yun HE; Fei MO; Jian Huang; Shu Zhang

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Mechanism of Polygonum capitatum in treatment of Helicobacter Pylori associated gastritis by network pharmacology, microarray data analysis and molecular docking

Author: Yan YUAN ¹ ; Ye YANG ¹ ; Jiao-Yan YAN ¹ ; Min LIU ¹ ; Fei MO ¹ ; Shu ZHANG ¹ ; Yan YUAN ² ; Yun HE ³ ; Fei MO ³ ; Jian HUANG ³ ; Shu ZHANG ³
Author Information

1. Dept of Basic Clinical Lab and Hematology Examination, School of Clinical Lab Science, Guizhou Medical University
2. Dept of Lab, Guiyang First Hospital
3. Center for Clinical Lab, The Affiliated Hospital of Guizhou Medical University
Publication Type:Journal Article
Keywords: Akt/NF-κB/NLRP3 signaling pathway; Helicobacter Pylori associated gastritis; microarray data analysis; molecular docking; network pharmacology; Polygonum capitatum
From: Chinese Pharmacological Bulletin 2023;39(5):961-969
CountryChina
Language:Chinese
Abstract: Aim To explore the mechanism of Polygonum capitatum(PC)in the treatment of Helicobacter Pylori associated gastritis(HAG). Methods The databases were used to identify the target of PC active compounds and HAG-related genes,and the intersection was taken to obtain the potential targets of PC treatment of HAG. The interaction network diagram of “drug-active compound-target-disease” and the protein-protein interaction(PPI)network of potential target protein interaction in HAG treated by PC were constructed by software Cytoscape 3.6.0. The important nodes in the network were screened by several topological indexes,and the GO and KEGG enrichment were analyzed by STRING database to obtain the potential signaling pathway of PC in the treatment of HAG. The binding ability of PC active components with key target proteins was observed by molecular docking method. On this basis,the related targets of PC in the treatment of HAG were verified in vivo and in vitro experiments. Results The PC active compounds and targets were identified through the database,and the “drug-active compound-target-disease” network diagram and the PPI network of potential target proteins were constructed. Combined with several topological indexes,the PPI network of potential target-protein interaction was analyzed,and 52 hub genes were screened. Further bioinformatics analysis and high-throughput sequencing revealed that PC exerted an effect on HAG through the Akt/NF-κB/NLRP3 pathway. Based on this,it was found that PC could reduce IL-18 and IL-1β in HAG GES-1 cells and HAG SD rats,up-regulate Akt and its phosphorylation level and reduce NF-κB expression,inhibit the activation of NLRP3 inflammatory body,so as to improve HAG inflammatory response. Conclusions PC could exert a therapeutic effect on HAG by activating Akt and its phosphorylation level,and inhibiting the expression of NF-κB and NLRP3 inflammasome related factors. This study provides a theoretical basis for explaining the mechanism of PC in the treatment of HAG.