1.Seroepidemiology of Toxocariasis and Its Clinical Implications in Gwangju and Jeonnam-province, Korea.
Eun Jeong WON ; Jin KIM ; Myung Geun SHIN ; Jong Hee SHIN ; Soon Pal SUH ; Dong Wook RYANG
Annals of Laboratory Medicine 2015;35(4):449-453
We investigated the seroepidemiological, clinical, and laboratory characteristics of patients suspected to have toxocariasis in Gwangju and Jeonnam-province, Korea. In total, 228 specimens were analyzed for anti-Toxocara canis IgG at two university hospitals from 2010 to 2012. The overall seropositive rate was 67.1%, and the seropositive rates among the eosinophilic and non-eosinophilic groups were 76.1% (105/138) and 53.3% (48/90), respectively. Risk factors for eosinophilia and toxocariasis were male sex (odds ratios [OR]=2.632 and 3.477, respectively) and a history of ingesting raw meat (OR=2.884 and 3.274, respectively), especially raw cow liver (OR=2.089 and 10.038, respectively). T. canis seropositivity (OR=5.807, P=0.004) and a history of consuming raw cow liver (OR=2.766, P=0.052) were risk factors for organ involvement. The anti-T. canis IgG level showed weakly positive correlations with eosinophil counts (r=0.234, P<0.001) and the duration of eosinophilia (r=0.155, P=0.019). Although limited to the regions of Gwangju and Jeonnam-province, this study supports the opinion that toxocariasis is a reasonable focus as a cause of eosinophilia and that it is also associated with organ involvement.
Eosinophilia
;
Eosinophils
;
Gwangju
;
Hospitals, University
;
Humans
;
Immunoglobulin G
;
Korea
;
Liver
;
Male
;
Meat
;
Risk Factors
;
Toxocariasis*
2.Cryptic e1a2 BCR-ABL1 Fusion With Complex Chromosomal Abnormality in de novo Myelodysplastic Syndrome.
Bo Young SEO ; Jun Hyoung LEE ; Min Gu KANG ; Seok Yong CHOI ; Soo Hyun KIM ; Jong Hee SHIN ; Soon Pal SUH ; Dong Wook RYANG ; Myung Geun SHIN
Annals of Laboratory Medicine 2015;35(6):643-646
No abstract available.
Aged
;
Base Sequence
;
Bone Marrow/metabolism/pathology
;
Chromosome Aberrations
;
DNA/chemistry/genetics/metabolism
;
Fusion Proteins, bcr-abl/*genetics
;
Humans
;
Immunophenotyping
;
In Situ Hybridization, Fluorescence
;
Male
;
Myelodysplastic Syndromes/diagnosis/*genetics
;
Real-Time Polymerase Chain Reaction
;
Sequence Analysis, DNA
3.Constitutional Chromosomal Abnormality Identified in a Sibling Donor After Bone Marrow Stem Cell Transplantation in a Pediatric Patient with Acute Megakaryoblastic Leukemia.
Bo Young SEO ; Hyun Woo CHOI ; Min Gu KANG ; Duck CHO ; Seung Jung KEE ; Soo Hyun KIM ; Jong Hee SHIN ; Soon Pal SUH ; Dong Wook RYANG ; Myung Geun SHIN
Annals of Laboratory Medicine 2015;35(1):162-164
No abstract available.
Bone Marrow/pathology
;
*Bone Marrow Transplantation
;
Child, Preschool
;
Chromosomes, Human, Pair 11
;
Chromosomes, Human, Pair 2
;
Humans
;
Infant
;
Karyotyping
;
Leukemia, Megakaryoblastic, Acute/genetics/*therapy
;
Male
;
Siblings
;
Tissue Donors
;
Translocation, Genetic/*genetics
;
Transplantation, Homologous
4.Alteration of the SETBP1 Gene and Splicing Pathway Genes SF3B1, U2AF1, and SRSF2 in Childhood Acute Myeloid Leukemia.
Hyun Woo CHOI ; Hye Ran KIM ; Hee Jo BAEK ; Hoon KOOK ; Duck CHO ; Jong Hee SHIN ; Soon Pal SUH ; Dong Wook RYANG ; Myung Geun SHIN
Annals of Laboratory Medicine 2015;35(1):118-122
BACKGROUND: Recurrent somatic SET-binding protein 1 (SETBP1) and splicing pathway gene mutations have recently been found in atypical chronic myeloid leukemia and other hematologic malignancies. These mutations have been comprehensively analyzed in adult AML, but not in childhood AML. We investigated possible alteration of the SETBP1, splicing factor 3B subunit 1 (SF3B1), U2 small nuclear RNA auxiliary factor 1 (U2AF1), and serine/arginine-rich splicing factor 2 (SRSF2) genes in childhood AML. METHODS: Cytogenetic and molecular analyses were performed to reveal chromosomal and genetic alterations. Sequence alterations in the SETBP1, SF3B1, U2AF1, and SRSF2 genes were examined by using direct sequencing in a cohort of 53 childhood AML patients. RESULTS: Childhood AML patients did not harbor any recurrent SETBP1 gene mutations, although our study did identify a synonymous mutation in one patient. None of the previously reported aberrations in the mutational hotspot of SF3B1, U2AF1, and SRSF2 were identified in any of the 53 patients. CONCLUSIONS: Alterations of the SETBP1 gene or SF3B1, U2AF1, and SRSF2 genes are not common genetic events in childhood AML, implying that the mutations are unlikely to exert a driver effect in myeloid leukemogenesis during childhood.
Adolescent
;
Carrier Proteins/*genetics
;
Child
;
Child, Preschool
;
Cohort Studies
;
Cytogenetic Analysis
;
DNA Mutational Analysis
;
Female
;
Gene Frequency
;
Genotype
;
Humans
;
Infant
;
Leukemia, Myeloid, Acute/*genetics/pathology
;
Male
;
Nuclear Proteins/*genetics
;
Phosphoproteins/*genetics
;
Polymorphism, Single Nucleotide
;
RNA Splicing
;
Ribonucleoprotein, U2 Small Nuclear/*genetics
;
Ribonucleoproteins/*genetics
5.Molecular Identification and Amphotericin B Susceptibility Testing of Clinical Isolates of Aspergillus From 11 Hospitals in Korea.
Min Seok HEO ; Jong Hee SHIN ; Min Ji CHOI ; Yeon Joon PARK ; Hye Soo LEE ; Sun Hoe KOO ; Won Gil LEE ; Soo Hyun KIM ; Myung Geun SHIN ; Soon Pal SUH ; Dong Wook RYANG
Annals of Laboratory Medicine 2015;35(6):602-610
BACKGROUND: We investigated the species distribution and amphotericin B (AMB) susceptibility of Korean clinical Aspergillus isolates by using two Etests and the CLSI broth microdilution method. METHODS: A total of 136 Aspergillus isolates obtained from 11 university hospitals were identified by sequencing the internal transcribed spacer (ITS) and beta-tubulin genomic regions. Minimal inhibitory concentrations (MICs) of AMB were determined in Etests using Mueller-Hinton agar (Etest-MH) and RPMI agar (Etest-RPG), and categorical agreement with the CLSI method was assessed by using epidemiological cutoff values. RESULTS: ITS sequencing identified the following six Aspergillus species complexes: Aspergillus fumigatus (42.6% of the isolates), A. niger (23.5%), A. flavus (17.6%), A. terreus (11.0%), A. versicolor (4.4%), and A. ustus (0.7%). Cryptic species identifiable by beta-tubulin sequencing accounted for 25.7% (35/136) of the isolates. Of all 136 isolates, 36 (26.5%) had AMB MICs of > or =2 microg/mL by the CLSI method. The categorical agreement of Etest-RPG with the CLSI method was 98% for the A. fumigatus, A. niger, and A. versicolor complexes, 87% for the A. terreus complex, and 37.5% for the A. flavus complex. That of Etest-MH was < or =75% for the A. niger, A. flavus, A. terreus, and A. versicolor complexes but was higher for the A. fumigatus complex (98.3%). CONCLUSIONS: Aspergillus species other than A. fumigatus constitute about 60% of clinical Aspergillus isolates, and reduced AMB susceptibility is common among clinical isolates of Aspergillus in Korea. Molecular identification and AMB susceptibility testing by Etest-RPG may be useful for characterizing Aspergillus isolates of clinical relevance.
Amphotericin B/*pharmacology
;
Antifungal Agents/*pharmacology
;
Aspergillus/*drug effects/isolation & purification
;
DNA, Fungal/chemistry/genetics/metabolism
;
Hospitals
;
Humans
;
Microbial Sensitivity Tests
;
Mycoses/diagnosis/microbiology
;
Republic of Korea
;
Sequence Analysis, DNA
;
Tubulin/genetics
6.Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry-Based VITEK MS System for the Identification of Acinetobacter Species from Blood Cultures: Comparison with VITEK 2 and MicroScan Systems.
Seung Yeob LEE ; Jong Hee SHIN ; Soo Hyun KIM ; Myung Geun SHIN ; Soon Pal SUH ; Dong Wook RYANG
Annals of Laboratory Medicine 2015;35(1):62-68
BACKGROUND: Acinetobacter species are the leading cause of bloodstream infection (BSI), but their correct identification is challenging. We evaluated the matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS)-based VITEK MS (bioMerieux, France), and two automated systems, VITEK 2 (bioMerieux) and MicroScan (Siemens, USA) for identification of Acinetobacter BSI isolates. METHODS: A total of 187 BSI isolates recovered at a university hospital in Korea between 2010 and 2012 were analyzed. The identification results obtained using VITEK MS and two automated systems were compared with those of rpoB sequencing. RESULTS: Of 187 isolates analyzed, 176 were identified to the species level by rpoB sequencing: the Acinetobacter baumannii group (ABG; 101 A. baumannii, 43 A. nosocomialis, 10 A. pittii isolates) was most commonly identified (82.4%), followed by Acinetobacter genomic species 13BJ/14TU (5.3%), A. ursingii (2.1%), A. soli (2.1%), A. bereziniae (1.1%), and A. junii (1.1%). Correct identification rates to the species group (ABG) level or the species level was comparable among the three systems (VITEK MS, 90.3%; VITEK 2, 89.2%; MicroScan, 86.9%). However, VITEK MS generated fewer misidentifications (0.6%) than VITEK 2 (10.8%) and MicroScan (13.1%) (P<0.001). In addition, VITEK MS demonstrated higher specificity (100%) for discrimination between ABG and non-ABG isolates than the other systems (both, 31.8%) (P<0.001). CONCLUSIONS: The VITEK MS system is superior to the VITEK 2 and MicroScan systems for identification of Acinetobacter BSI isolates, with fewer misidentifications and better discrimination between the ABG and non-ABG isolates.
Acinetobacter/*genetics/isolation & purification
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Acinetobacter Infections/diagnosis/microbiology
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Bacterial Proteins/genetics
;
Bacterial Typing Techniques/*instrumentation/*methods
;
Blood/*microbiology
;
DNA, Bacterial/*analysis/metabolism
;
Databases, Genetic
;
Humans
;
*Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
7.Direct Measurement of Serum Immunoglobulin Heavy and Light Chain Pairs for Identification of Monoclonal Gammopathy and a Performance Comparison with Capillary Electrophoresis.
Min Gu KANG ; Myung Geun SHIN ; Jin Gak KIM ; Min Joong JANG ; O Jin LEE ; Hye Ran KIM ; Duck CHO ; Soo Hyun KIM ; Seung Jung KEE ; Jong Hee SHIN ; Soon Pal SUH ; Dong Wook RYANG
Laboratory Medicine Online 2014;4(1):28-35
BACKGROUND: Determination of monoclonal gammopathy through conventional protein electrophoresis is sometimes difficult because of the presence of large proteins such as haptoglobin and transferrin, which may obscure the results. Ambiguity in an electrophoresis band can give rise to confusion or difficulty in interpretation. The heavy chain/light chain assay (HLC assay) using Hevylite antibody (The Binding Site, UK) has recently been developed for the accurate measurement of monoclonal proteins. We compared the immunotyping (IT) profiles to the immunoglobulin (Ig) heavy/light chain measurements obtained using the HLC assay and observed the ratios between intact Ig kappa and lambda. METHODS: We collected 35 and 28 sera from patients with suspicious and definitive monoclonal protein, respectively. Then we performed serum protein electrophoresis (SPEP) and IT by Capillarys2 (Sebia, USA). Monoclonal protein production was investigated using Freelite antibody (The Binding Site) and specific Ig(G, A)kappa and Ig(G, A)lambda Hevylite antibodies. The results were analyzed using PASW 18.0 for Windows (IBM, USA). RESULTS: Direct measurement of Ig heavy/light chains showed discordant IT results for 12 (34.2%) of 35 patients' sera with suspicious SPEP pattern and identical IT results for 28 patients' sera with definitive monoclonal peak in the SPEP results. Overall, the results of the HLC assay and IT showed good agreement (kappa=0.718, P=0.000 by cross-tabulation Gamma, Kappa analysis). CONCLUSIONS: The results of direct measurement of serum Ig heavy chain/light chain pairs were comparable to those of IT and were helpful for determination of monoclonality in the case of ambiguous electrophoresis results. Measurement of the heavy chain/light chain pair ratio also allowed precise quantification of the monoclonal Igs with ambiguous electrophoresis patterns and identification or discrimination of clonality.
Antibodies
;
Binding Sites
;
Capillaries*
;
Discrimination (Psychology)
;
Electrophoresis
;
Electrophoresis, Capillary*
;
Haptoglobins
;
Humans
;
Immunoglobulins*
;
Multiple Myeloma
;
Paraproteinemias*
;
Transferrin
8.In Vitro Fluconazole and Voriconazole Susceptibilities of Candida Bloodstream Isolates in Korea: Use of the CLSI and EUCAST Epidemiological Cutoff Values.
Min Joong JANG ; Jong Hee SHIN ; Wee Gyo LEE ; Mi Na KIM ; Kyungwon LEE ; Hye Soo LEE ; Mi Kyung LEE ; Chulhun L CHANG ; Hee Chang JANG ; Eun Song SONG ; Soo Hyun KIM ; Myung Geun SHIN ; Soon Pal SUH ; Dong Wook RYANG
Annals of Laboratory Medicine 2013;33(3):167-173
BACKGROUND: At present, the clinical breakpoints (CBPs) of both fluconazole and voriconazole are available only for 3 common Candida species in the Clinical and Laboratory Standards Institute (CLSI) and the European Committee on Antimicrobial Susceptibility Testing (EUCAST) methods. Epidemiological cutoff values (ECVs) were recently applied to both methods to detect the emergence of acquired resistance (i.e., non-wild-type isolates) among 5 common Candida species. METHODS: We performed a nationwide study to determine the fluconazole and voriconazole susceptibility of Candida bloodstream isolates (BSIs) using both the CLSI and EUCAST methods. A total of 423 BSIs of 5 Candida species were collected from 8 hospitals. The azole susceptibilities were assessed on the basis of the species-specific CBPs and ECVs. RESULTS: Of the 341 BSIs of 3 common Candida species (i.e., C. albicans, C. tropicalis, and C. parapsilosis), 0.3% and 0.9%, 0.0% and 1.5% of isolates were categorized as fluconazole and voriconazole resistant according to the CLSI and EUCAST CBPs, respectively. Of 423 total BSIs, 1.4% and 2.6% had fluconazole minimum inhibitory concentrations (MICs) exceeding the ECVs according to the CLSI and EUCAST, respectively; 1.0% and 2.1% had voriconazole MICs exceeding the ECVs according to the CLSI and EUCAST, respectively. Categorical agreement between the methods using ECVs was 98.3% for fluconazole and 98.3% for voriconazole. CONCLUSIONS: The EUCAST and CLSI methods using ECVs provide highly concordant results. Moreover, non-wild-type isolates with possibly acquired azole resistance were rare among the BSIs of 5 common Candida species in Korea.
Antifungal Agents/*pharmacology
;
Candida/*drug effects/isolation & purification
;
Candidiasis/epidemiology/microbiology
;
Drug Resistance, Fungal/drug effects
;
Fluconazole/*pharmacology
;
Humans
;
Microbial Sensitivity Tests
;
Pyrimidines/*pharmacology
;
Republic of Korea
;
Triazoles/*pharmacology
9.In Vitro Fluconazole and Voriconazole Susceptibilities of Candida Bloodstream Isolates in Korea: Use of the CLSI and EUCAST Epidemiological Cutoff Values.
Min Joong JANG ; Jong Hee SHIN ; Wee Gyo LEE ; Mi Na KIM ; Kyungwon LEE ; Hye Soo LEE ; Mi Kyung LEE ; Chulhun L CHANG ; Hee Chang JANG ; Eun Song SONG ; Soo Hyun KIM ; Myung Geun SHIN ; Soon Pal SUH ; Dong Wook RYANG
Annals of Laboratory Medicine 2013;33(3):167-173
BACKGROUND: At present, the clinical breakpoints (CBPs) of both fluconazole and voriconazole are available only for 3 common Candida species in the Clinical and Laboratory Standards Institute (CLSI) and the European Committee on Antimicrobial Susceptibility Testing (EUCAST) methods. Epidemiological cutoff values (ECVs) were recently applied to both methods to detect the emergence of acquired resistance (i.e., non-wild-type isolates) among 5 common Candida species. METHODS: We performed a nationwide study to determine the fluconazole and voriconazole susceptibility of Candida bloodstream isolates (BSIs) using both the CLSI and EUCAST methods. A total of 423 BSIs of 5 Candida species were collected from 8 hospitals. The azole susceptibilities were assessed on the basis of the species-specific CBPs and ECVs. RESULTS: Of the 341 BSIs of 3 common Candida species (i.e., C. albicans, C. tropicalis, and C. parapsilosis), 0.3% and 0.9%, 0.0% and 1.5% of isolates were categorized as fluconazole and voriconazole resistant according to the CLSI and EUCAST CBPs, respectively. Of 423 total BSIs, 1.4% and 2.6% had fluconazole minimum inhibitory concentrations (MICs) exceeding the ECVs according to the CLSI and EUCAST, respectively; 1.0% and 2.1% had voriconazole MICs exceeding the ECVs according to the CLSI and EUCAST, respectively. Categorical agreement between the methods using ECVs was 98.3% for fluconazole and 98.3% for voriconazole. CONCLUSIONS: The EUCAST and CLSI methods using ECVs provide highly concordant results. Moreover, non-wild-type isolates with possibly acquired azole resistance were rare among the BSIs of 5 common Candida species in Korea.
Antifungal Agents/*pharmacology
;
Candida/*drug effects/isolation & purification
;
Candidiasis/epidemiology/microbiology
;
Drug Resistance, Fungal/drug effects
;
Fluconazole/*pharmacology
;
Humans
;
Microbial Sensitivity Tests
;
Pyrimidines/*pharmacology
;
Republic of Korea
;
Triazoles/*pharmacology
10.Comparison between V-Tubes and BD Vacutainer Tubes for Use in Laboratory Tests.
Eun Jeong WON ; Myung Geun SHIN ; Min Joong JANG ; Duck CHO ; Seung Jung KEE ; Soo Hyun KIM ; Jong Hee SHIN ; Yonggwan WON ; Dong Wook RYANG ; Soon Pal SUH
Laboratory Medicine Online 2013;3(3):145-154
BACKGROUND: Vacuum tubes are widely used in clinical laboratories for routine tests. We compared a newly developed V-tube (AB Medical, Korea) and BD tubes (BD, USA) in common clinical assays, i.e., hematological, chemical, and immunological tests. METHODS: In total, 100 volunteers comprising 79 patients and 21 healthy volunteers were recruited and peripheral blood samples were collected with 2 brands of EDTA tubes and serum-separating tubes (SSTs). EDTA-tube samples were evaluated using 16 routine hematological tests. The SST samples were analyzed for 32 routine chemical parameters and 3 thyroid hormones. The results were statistically analyzed using the paired t-test and Bland-Altman plot. In addition, the stability of each analyte in 2 brands of vacutainers was evaluated. The results of the hematological tests at t=0 hr were compared with those at t=72+/-2 hr, and the results of the chemical parameters and thyroid hormones at t=0 hr were compared with those at t=72+/-2 hr and t=168+/-2 hr for each tube. RESULTS: Paired t-test analysis revealed that the test results of 16 routine hematological parameters, 32 routine chemical parameters, and 3 thyroid hormones showed clinically allowable differences between the 2 brands of vacuum tubes (t=0 hr). The results obtained when using V-tubes showed a statistically significant correlation with those obtained when using BD tubes. The stability of each analyte was similar in both vacuum tubes. Except for 10 parameters (white blood cell count, mean corpuscular volume, basophils [%], mean corpuscular hemoglobin concentration, monocytes [%], phospholipid, sodium, potassium, chloride, and free T4), all parameters showed significant but clinically allowable differences with regard to storage duration. CONCLUSIONS: The newly developed V-tube vacutainers provide a suitable alternative to BD tubes in common clinical laboratories.
Basophils
;
Blood Cell Count
;
Edetic Acid
;
Erythrocyte Indices
;
Hematologic Tests
;
Humans
;
Monocytes
;
Potassium
;
Sodium
;
Thyroid Hormones
;
Vacuum

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