1.Detection and differentiation of Herpes Simplex Virus 1 and 2, and Varicella-Zoster virus in vesicle fluid, joint fluid and serum using PCR method.
Hae Kyung PARK ; So Youn WOO ; Hyun Jin KIM ; Chung Hwa LEE
Journal of the Korean Society for Microbiology 2000;35(2):191-201
The viruses of Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2) and Varicella-Zoster virus (VZV) which belong to the alpha herpes subfamily are important human pathogens. When eruptions were not fully developed from these viral infections, clinical diagnosis was not always easy and required virological confirmation test. The above viruses were reactivated in individuals who were compromised in immune competence for one reason or another. Polymerase chain reaction (PCR) enables rapid and sensitive detection of HSV and VZV DNAs. Its sensitivity was largely influenced by choice of primers. Authors conducted a study to detect of those three viruses in human specimens including vesicle fluid and joint fluid and serum using PCR methods. Primers used for this study were the general primer pair GPHV-RU which was known to amplify within the genes enjoying the highest degree of homology between UL15 of HSV and UL42 of VZV. PCR with primers hybridized pair GPHV-RU amplifies a 396 bp with HSV-1 and HSV-2 standard stain DNA and 405 bp with VZV standard strain DNA. Restriction enzyme cleavage with HpaII and DdeI were used to detect and distinguish DNAs of HSV-1 and HSV-2 and VZV. The purpose of this study was a rapid and easy detection of VZV and HSV-1 or HSV-2 from various clinical specimens (vesicle fluid, serum and joint fluid) by PCR method. Used methods were: HSV PCR with primer 1, 2 and HpaII RE digestion; VZV nested PCR; HSV PCR with primer A, B and BssHII RE digestion. 1) In 33 cases (33/42, 78.6%) VZV was detected single or mixed infection from 42 clinical specimens which included vesicle fluid (5), serum from respiratory infected children (10), serum from immune suppressed adult cancer patients (7) and joint fluid from arthritis patients (20). 2) In 20 cases (20/42, 42.6%) HSV was detected singly or mixed infection and 19 of the cases were HSV-2 and 1 case was HSV-1. 3) In 19 cases (19/42, 45.2%) VZV was singly detected which included serum from respiratory infected children (6 cases), joint fluid from arthritis patients (9 cases), vesicle fluid (2 cases) and serum form immunosuppressed cancer patients (2 cases). 4) HSV was singly detected in 6 cases (6/42, 14.3%) which included joint fluid from arthritis patients (5 cases) and serum form respiratory infected children (1 cases). 5) 14 cases of VZV and HSV mixed infection (14/42, 33.3%) were detected. They included vesicle fluid (3 cases), serum form immunosuppressed cancer patients (4 cases), serum from respiratory infected children (2 cases) and joint fluid from arthritis patients (5 cases). 6) HSV-1 and HSV-2 detection and typing by HSV PCR with primer A, B and BssHII RE digestion method was more sensitive and the results were easier to detect than on other method.
Adult
;
Arthritis
;
Child
;
Coinfection
;
Diagnosis
;
Digestion
;
DNA
;
Herpes Simplex*
;
Herpesvirus 1, Human*
;
Herpesvirus 2, Human
;
Herpesvirus 3, Human*
;
Humans
;
Joints*
;
Mental Competency
;
Polymerase Chain Reaction*
;
Simplexvirus*
2.Detection of resistance mutation to lamivudine in HIV-1 infected patients.
Young Keol CHO ; Heung Sup SUNG ; Hee Jung LEE ; Yoo Kyum KIM ; Hyun Sook CHI ; Goon Jae CHO ; Moon Won KANG
Journal of the Korean Society for Microbiology 2000;35(2):181-190
To investigate resistance to lamivudine (3TC), we examined the incidence of M184V in 20 HIV-1 patients treated with 3TC for 13.1 +/- 9 months. Fourteen of 20 patients had been exposed to zidovudine (ZDV) or didanosine (ddl) prior to 3TC therapy. Nested PCR targeting to reverse transcriptase (RT) and direct sequencing were performed for peripheral blood mononuclear cells sampled serially. There were resistance mutations to ZDV in at least 9 patients at baseline, although there was no resistance mutation to 3TC. We could detect M184V in 6 (30%) out of 20 patients. The incidence of M184V increased as the duration of therapy prolongs (13% in samples<12 months; 47% in samples gtoreq 12 months). The frequency of mutation M184V was higher in patients with previous mutation to ZDV than in patients with wild type. Resistance mutation was not detected in 7 patients. This study shows that resistance to 3TC tends to develop rapidly in patients with baseline mutations or two drugs combination therapy than in those treated simultaneously with triple drugs. This report is the first on resistance to 3TC in Korean AIDS patients.
Didanosine
;
HIV-1*
;
Humans
;
Incidence
;
Lamivudine*
;
Polymerase Chain Reaction
;
RNA-Directed DNA Polymerase
;
Zidovudine
3.Pulsed field gel electrophoresis profile of erythromycin-clindamycin resistant Streptococcus pyogenes isolated in Korea.
Young Hee LEE ; Kyu Jam HWANG ; Kwang Jun LEE ; Kang Soo PARK ; Song Mee BAE ; Hwa Young SUNG ; Ki Sang KIM ; Chong Sam LEE
Journal of the Korean Society for Microbiology 2000;35(2):171-180
Ninety two strains of Streptococcus pyogenes were isolated from patients with pharyngitis, scarlet fever, skin infection, and invasive streptococcal infections in Seoul, Korea from January to December, 1998. All isolates were epidemiologically characterized by T protein serotype, and serum opacity factor (OF) detection to phenotypes. To analyze the genetic relationship, fifty two isolates including 32 erythromycin-clindamycin (Em-Cm) resistant strains, 20 antimicrobial susceptible strains were attempted to the pulsed-field gel electrophoresis (PFGE). T protein serotype showed 16 kinds in distribution including T12 and T4. Among the total isolates, 40 strains (43.5%) belonged to the T12 serotype and twenty strains (21.7%) to T4 serotype. On the other hand, when infection aspect of S. pyogenes isolates were analysed by T serotype distribution, T12 type was predominant for pharyngitidis which contributed to 21 strains (53%) and for skin infection isolates which contributed to 11 strains (28%), respectively. In case of T4 type, it was the most predominant pharyngitidis isolates which contributed to 8 strains (40%). In T serotype distribution of Em-Cm resistant strains, 27 strains (84%) of the thirty two showed T12 serotype. In minimum inhibitory concentration (MIC) values of Em-Cm resistance isolates, thirty two isolates showed resistant to erythromycin 27 strains (84%), had high MIC of >128 mug/ml. And also to clindamycin, twenty two strains (69%) had high MIC of >128 mug/ml. When OF detection of Em-Cm resistance of S. pyogenes isolates were analyzed by T serotype distribution, T12 serotype isolates revealed that all of the isolates except one strain were OF negative. In PFGE profile analysis to Em-Cm resistance isolates, of the twenty seven, Em-Cm resistance of T12 serotype isolates, 26 strains showed identical PFGE profile and all of these isolates revealed that OF negative. Eighty four percent of Em-Cm resistance S. pyogenes isolates had identical phenotype and PFGE profile. These results strongly suggested that the Em-Cm resistant S. pyogenes isolates from Seoul area showed close genetic correlation and PFGE could be available tool for molecular epidemiology.
Clindamycin
;
Electrophoresis, Gel, Pulsed-Field*
;
Erythromycin
;
Hand
;
Humans
;
Korea*
;
Microbial Sensitivity Tests
;
Molecular Epidemiology
;
Pharyngitis
;
Phenotype
;
Scarlet Fever
;
Seoul
;
Skin
;
Streptococcal Infections
;
Streptococcus pyogenes*
;
Streptococcus*
4.Increased expression of adhesion molecules on human umbilical vein endothelial cells by Orientia tsutsugamushi infection.
Eun Bong LEE ; Seung Hoon HAN ; Sang Wook KIM ; Kyung Soo IHN ; Seung Yong SEONG ; Ik Sang KIM ; Myung Sik CHOI
Journal of the Korean Society for Microbiology 2000;35(2):159-169
Scrub typhus is caused by Orientia tsutsugamushi characterized by fever, headache, lymphadenopathy and eschar formation. Infiltration of inflammatory cells around blood vessels and within the affected organs is known to be pathologic hallmark of the scrub typhus. Recently, expression of adhesion molecules on vascular endothelial cells was implicated as an important pathogenic mechanism in rickettsial disease. This study was performed to examine the expression of adhesion molecules and to investigate its role in the pathogenesis of O. tsutsugamushi infection. The expression of adhesion molecules on human umbilical vein endothelial cells (HUVEC) was measured by flow cytometry and indirect immunofluorescence. Expression of E-selectin, ICAM-1 and VCAM-1 was significantly increased 4 hours after the infection and persisted at least for 24 hours. Expression of those molecules was not induced by killed O. tsutsugamushi. Adhesion of polymorphonuclear cells and mononuclear cells to HUVEC was increased after the infection with O. tsutsugamushi. In conclusion, adhesion molecules are expressed on HUVEC during the infection of live O. tsutsugamushi and those molecules can contribute to the infiltration of inflammatory cells during the infection.
Blood Vessels
;
E-Selectin
;
Endothelial Cells
;
Fever
;
Flow Cytometry
;
Fluorescent Antibody Technique, Indirect
;
Headache
;
Human Umbilical Vein Endothelial Cells*
;
Humans*
;
Intercellular Adhesion Molecule-1
;
Lymphatic Diseases
;
Orientia tsutsugamushi*
;
Scrub Typhus
;
Vascular Cell Adhesion Molecule-1
5.Up-regulation of prothymosin alpha in THP-1 cells infected with Mycobacterium tuberculosis.
Ho Yeon SONG ; Kwang Sik JANG ; Hee Sun BYOUN ; Shin Je LEE ; Jin Koo KIM ; Yong Kyung CHOE ; Kwang Kjune KO
Journal of the Korean Society for Microbiology 2000;35(2):149-157
Mycobacterium tuberculosis is capable of growing and survival within macrophage. The purpose of this study was to identify the genes regulated by infection of mycobacteria in human monocytic THP-1 cells. We used the differential display reverse transcriptase polymerase chain reaction (DD RT-PCR) and nothern blot analysis to confirm the differentially expressed genes from THP-1 cells infected with live Mycobacterium tuberculosis H37Rv, heat-kille Mycobacterium tuberculosis H37Rv and live Mycobacterium bovis BCG. Among many up or down-regulated clones, 27 clones were sequenced and compared with known genes on GenBank. Thirteen of over-expressed clones from THP-1 cells infected with live Mycobacterium tuberculosis H37Rv were identical to human prothymosin alpha, eight were novel clones and six clones showed homology with Human ferritin H chain, Escherichia coli bgl, Mouse RNA-dependent EIF-2 alpha kinase, E. coli htrL, Hyaluronan receptor and T cell receptor. Our result suggests that Mycobacterium tuberculosis might regulate prothymosin alpha gene transcription in monocytic THP-1 cell.
Animals
;
Antigens, CD44
;
Clone Cells
;
Databases, Nucleic Acid
;
Escherichia coli
;
Eukaryotic Initiation Factor-2
;
Ferritins
;
Humans
;
Macrophages
;
Mice
;
Mycobacterium bovis
;
Mycobacterium tuberculosis*
;
Mycobacterium*
;
Phosphotransferases
;
Receptors, Antigen, T-Cell
;
Reverse Transcriptase Polymerase Chain Reaction
;
Up-Regulation*
6.Apoptosis induction and associated factor of Staphylococcus aureus in J774A.1 mouse macrophage cell line.
Sang Ho KIM ; Chang Min LEE ; Soo Jin JEONG ; Min Ho JEONG ; Jin Koo KIM ; Jae Kwan CHA ; Hyung Sik LEE ; Young Jin LIM ; Sang Hwa LEE
Journal of the Korean Society for Microbiology 2000;35(1):87-95
Staphylococcus aureus infections are often life-threatening. Relatively little is known about the host response to these infections, in particular, the implication of apoptosis induced by this microorganism. In this study, we have shown that S. aureus was cytotoxic to J774A.1 cell, a murine macrophage cell line. The cell death mediated by S. aureus occurred through apoptosis, as shown by increase in the proportion of fragmented host cell DNA. Although phagocytosis and NO production had important role in the induction of apoptosis, the contact between bacteria and host cells was not essential for this pathway. A certain bacterial product could also induce typical caspase-dependent apoptosis of J774A.1 cell. It is expected that new interpretation may be possible to host-parasite relationship based on these results.
Animals
;
Apoptosis*
;
Bacteria
;
Cell Death
;
Cell Line*
;
DNA
;
Host-Parasite Interactions
;
Macrophages*
;
Mice*
;
Phagocytosis
;
Staphylococcus aureus*
;
Staphylococcus*
7.Effect of Lactococcus lactis 1370 on the formation of artificial plaque.
Jin CHUNG ; Sung Yee YIM ; Jong Suk OH
Journal of the Korean Society for Microbiology 2000;35(1):77-85
Streptococcus mutans is the most important causative bacteria of dental caries among the oral bacteria. Lactococcus lactis 1370 was isolated from the oral cavity of child. The effect of Lactococcus lactis 1370 on the formation of artificial plaque by Streptococcus mutans was studied. 1. The insoluble substances and bacteria were much more attached on the wall of disposable cuvette in the culture of Streptococcus mutans than in the combined culture of Streptococcus mutans and Lactococcus lactis 1370. 2. The mean weight of produced artificial plaque on the wires in the beaker was 131.7 mg in the culture of Streptococcus mutans only, whereas being reduced to 6.4 mg in the combined culture of Streptococcus mutans and Lactococcus lactis 1370 (p<0.05). The viable cell didn't show the significant difference between them after culturing. 3. When Streptococcus mutans was cultured in the media containing culture supernatant of Lactococcus lactis 1370 cultured in M17 broth containing 0.5% yeast extract and 5% sucrose, the mean weight of produced artificial plaque was 8.0 mg on the wires, whereas being 125.4 mg in the media without culture supernatant of Lactococcus lactis 1370 (p<0.05). The viable cell didn't show the significant difference between them after culturing. 4. When Streptococcus mutans was cultured in the media containing soluble polymer produced by Lactococcus lactis 1370, the mean weight of produced artificial plaque was significantly reduced compared with being cultured in the media without soluble polymer (p<0.05). The viable cell didn't show the significant difference between them after culturing. 5. The soluble polymer produced by Lactococcus lactis 1370 was glucan. 6. The glucan produced by Lactococcus lactis 1370 was water-soluble glucan containing alpha-1,6-glucose linkage as the main linkage. These results suggest that the artificial plaque formed by Streptococcus mutans is inhibited by water-soluble glucan produced by Lactococcus lactis 1370.
Bacteria
;
Child
;
Dental Caries
;
Humans
;
Lactococcus lactis*
;
Lactococcus*
;
Mouth
;
Polymers
;
Streptococcus mutans
;
Sucrose
;
Yeasts
8.Genomic species identification of Acinetobacter calcoaceticus - Acinetobacter baumannii complex strains by amplified ribosomal DNA restriction analysis (ARDRA).
Jae Young OH ; Jae We CHO ; Jong Chun PARK ; Je Chul LEE
Journal of the Korean Society for Microbiology 2000;35(1):69-76
Members of the genus Acinetobacter are recognized as newer pathogens of the nosocomial infection with an increasing frequency in recent years. Strains that belonged to A. calcoaceticus-A. baumannii complex (genomic species 1, 2, 3, and 13TU) were major groups associated with nosocomial infection. Phenotypic identification was unreliable and laborious method to classify Acinetobacter strains into 19 genomic species. Rapid and reliable identification of clinical isolates is essential to diagnosis and epidemiology of Acinetobacter. We investigated the suitability of amplified ribosomal DNA restriction analysis (ARDRA) to identify genomic species of 131 Acinetobacter isolates. The 16S rRNA genes (ribosomal DNA) were enzymatically amplified and the amplified PCR products were restricted independently with the enzymes, AluI, CfoI, and MboI. Genomic species of Acinetobacter was classified by the combinations of restriction patterns. The analysis was showed that restriction profiles were characteristic for each genomic species. One hundred fourteen isolates were identified as A. baumannii, twelve were identified as genomic species 13TU, and one was identified as genomic species 3. Four isolates were found to be unknown organisms. All of the isolates which were identified to A. baumannii by phenotypic tests were completely discriminated into A. baumannii and genomic species 13TU by ARDRA. This study demonstrates that ARDRA is a rapid and simple techniques for the identification of Acinetobacter species according to the genomic species.
Acinetobacter baumannii*
;
Acinetobacter calcoaceticus*
;
Acinetobacter*
;
Cross Infection
;
Diagnosis
;
DNA, Ribosomal*
;
Epidemiology
;
Genes, rRNA
;
Polymerase Chain Reaction
9.Seropositive rate of Orientia tsutsugamushi in Tamias sibiricus from Korea.
Jin Won SONG ; Sang Won LEE ; Eun Young KHO ; Ki Mo CHUNG ; Yong Ju LEE ; Ki Joon SONG ; Luck Ju BAEK
Journal of the Korean Society for Microbiology 2000;35(1):61-68
Among wild chipmunks, Tamias sibiricus, captured in Kyunggi and Kangwon province in Korea, 1997, seropositivity for Orientia tsutsugamushi was determined. Serological test for Orientia tsutsugamushi infection was performed using indirect immunofluorescent antibody technique (IFA). Of 243 wild chipmunks, 61 against Gilliam strain and 64 against Karp strain of Orientia tsutsugamushi were IFA positive. Seropositivity against Gilliam strain was shown 33.3% in Kyunggi and 23.5% in Kangwon province, and against Karp strain was shown 33.3% and 25.4%, respectively.
Gangwon-do
;
Gyeonggi-do
;
Korea*
;
Orientia tsutsugamushi*
;
Sciuridae*
;
Serologic Tests
10.Identification and phylogenetic relationship of dermatophytes based on RFLP analysis and nucleotide sequence of internal transcribed spacer (ITS)1 in nuclear ribosome DNA.
Yeon Hwa CHOI ; Yeong Seon LEE ; Jae Il YOO ; Bong Su KIM
Journal of the Korean Society for Microbiology 2000;35(1):49-60
ITSI-5.8S-ITSII rDNA region was amplified from the reference strains and clinical isolates with ITS1 and ITS4 primers. These primers amplified DNA fragments of 550 bp in Microsporum audouinii and Trichophyton violaceum, 700 bp in Microsporum gypseum, Trichophyton mentagrophytes, Trichophyton rubrum, and Trichophyton tonsurans, and 750 bp in Microsporum ferreugineum and Microsporum canis. The restriction enzyme patterns of PCR products digested with 13 restriction enzyme including PstI were distint among the genera, whereas identical in the same species. Examination of the ITS (Internal Transcribed Spacers)1 nucleotide sequence revealed that there was the genetic difference in each genera and species. Phylogenetic relationship among each species showed that the Trichophyton mentagrophytes was more closely related Trichophyton tonsurans than Trichophyton rubrum, and Microsporum gypseum was less related than Microsporum spp.
Arthrodermataceae*
;
Base Sequence*
;
DNA*
;
DNA, Ribosomal
;
Microsporum
;
Polymerase Chain Reaction
;
Polymorphism, Restriction Fragment Length*
;
Ribosomes*
;
Trichophyton
Result Analysis
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