1.Global systematic review and meta-analysis of knowledge, attitudes, and practices towards dengue fever among the general population
Abdolreza Sotoodeh Jahromi ; Mohammad Jokar ; Arman Abdous
Asian Pacific Journal of Tropical Medicine 2024;17(5):191-207
Objective: To determine the global level of knowledge, attitudes,
and practices towards dengue fever among the general population.
Methods: To complete this systematic review and meta-analysis,
a thorough search for pertinent English-language literature was
undertaken during the study's extension until October 2023. The
search used Google Scholar, Scopus, PubMed/MEDLINE, Science
Direct, Web of Science, EMBASE, Springer, and ProQuest. A
quality assessment checklist developed using a modified Newcastle-
Ottawa Scale for the cross-sectional study was used to evaluate the
risk of bias in the included papers. Inverse variance and Cochran Q
statistics were employed in the STATA software version 14 to assess
study heterogeneity. When there was heterogeneity, the Dersimonian
and Liard random-effects models were used.
Results: 59 Studies totaling 87 353 participants were included in
this meta-analysis. These investigations included 86 278 participants
in 55 studies on knowledge, 20 196 in 33 studies on attitudes, and
74 881 in 29 studies on practices. The pooled estimates for sufficient
knowledge, positive attitudes, and dengue fever preventive behaviors
among the general population were determined as 40.1% (95%
CI 33.8%-46.5%), 46.8% (95% CI 35.8%-58.9%), and 38.3%
(95% CI 28.4%-48.2%), respectively. Europe exhibits the highest
knowledge level at 63.5%, and Africa shows the lowest at 20.3%.
Positive attitudes are most prevalent in the Eastern Mediterranean
(54.1%) and Southeast Asia (53.6%), contrasting sharply with the
Americas, where attitudes are notably lower at 9.05%. Regarding
preventive behaviors, the Americas demonstrate a prevalence of
12.1%, Southeast Asia at 28.1%, Western Pacific at 49.6%, Eastern
Mediterranean at 44.8%, and Africa at 47.4%.
Conclusions: Regional disparities about the knowledge, attitude
and preventive bahaviors are evident with Europe exhibiting the
highest knowledge level while Africa has the lowest. These findings
emphasize the importance of targeted public health interventions
tailored to regional contexts, highlighting the need for regionspecific
strategies to enhance dengue-related knowledge and
encourage positive attitudes and preventive behaviors.
2.Resurgence of measles virus infection in an eliminated country, Sri Lanka
Merennage Anusha Yasanthi Fernando ; Gankandage Prabhath Chathuranga ; Kaanthaka Gunaradha Abeygunasekara
Asian Pacific Journal of Tropical Medicine 2024;17(5):208-213
Objective: To describe the situation of measles in Sri Lanka from
May to November, 2023 and to define the role of virology laboratory
towards case confirmation and epidemiological and genetic
characterization of the outbreak.
Methods: This retrospective study analyzed all samples tested for
measles from 1st of May to 30th of November, 2023 at National
Measles Rubella Laboratory, Sri Lanka. According to the World
Health Organization (WHO) algorithm, serum and oropharyngeal/
nasopharyngeal swabs were tested with WHO recommended kits
for anti-measles IgM and measles virus specific RNA, respectively.
Selected RNA positive samples were sequenced at reference
laboratory, India. Analysis of sequencing data and construction of
phylogenetic tree were carried out at National Measles Rubella
Laboratory. Data was analyzed using descriptive statistics.
Results: Of the total 1 132 serum samples and 497 oropharyngeal/
nasopharyngeal swabs from 1 326 patients, 657 (49.5%) patients
were confirmed as measles by anti-measles IgM, measles virus
specific RNA or both. Males (55.6%, n=365) and the age group from
>20 to ≤30 years (33.0%, n=217) predominated positive patients. All
provinces reported measles positive cases. All samples sequenced
(100%, n=42) were genotype D8 with 95.2% (n=40) bearing
Victoria.Australia origin.
Conclusions: We described resurgence of measles in an eliminated
country, confirming the genotype to be D8, one of the two genotypes
currently circulating globally. Further, the study strongly convinced
the importance of a strengthened virological surveillance system in
an eliminated country, despite its eliminated status.
3.Phylogenetic, phylogeographic and divergence time analysis of Anopheles subpictus species complex using ITS2 and COI sequences
Lihini Sandaleka Muthukumarana ; Methsala Madurangi Wedage ; Samanthika Rathnayake
Asian Pacific Journal of Tropical Medicine 2024;17(5):214-225
Objective: To address the phylogenetic and phylogeographic
relationship between different lineages of Anopheles (An.) subpictus
species complex in most parts of the Asian continent by maximum
utilization of Internal Transcriber Spacer 2 (ITS2) and cytochrome C
oxidase I (COI) sequences deposited at the GenBank.
Methods: Seventy-five ITS2, 210 COI and 26 concatenated
sequences available in the NCBI database were used. Phylogenetic
analysis was performed using Bayesian likelihood trees, whereas
median-joining haplotype networks and time-scale divergence trees
were generated for phylogeographic analysis. Genetic diversity
indices and genetic differentiation were also calculated.
Results: Two genetically divergent molecular forms of An. subpictus
species complex corresponding to sibling species A and B are
established. Species A evolved around 37-82 million years ago
in Sri Lanka, India, and the Netherlands, and species B evolved
around 22-79 million years ago in Sri Lanka, India, and Myanmar.
Vietnam, Thailand, and Cambodia have two molecular forms: one
is phylogenetically similar to species B. Other forms differ from
species A and B and evolved recently in the above mentioned
countries, Indonesia and the Philippines. Genetic subdivision among
Sri Lanka, India, and the Netherlands is almost absent. A substantial
genetic differentiation was obtained for some populations due to
isolation by large geographical distances. Genetic diversity indices
reveal the presence of a long-established stable mosquito population,
at mutation-drift equilibrium, regardless of population fluctuations.
Conclusions: An. subpictus species complex consists of more than
two genetically divergent molecular forms. Species A is highly
divergent from the rest. Sri Lanka and India contain only species A
and B.
4.Morphological and molecular description of a new species of sandfly, Sergentomyia (Neophlebotomus) ashwanii sp. nov. (Diptera: Psychodidae) from Western Ghats, India
Prasanta Saini ; Harish Kumar Shah ; Jessu Mathew ; Sonia T
Asian Pacific Journal of Tropical Medicine 2024;17(5):226-234
Objective: To report a new species of sandfly, Sergentomyia
(Neophlebotomus) ashwanii sp. nov. (Diptera: Psychodidae) from
Western Ghats, India.
Methods: A systematic sandfly survey was conducted in the
Thrissur and Kollam districts of Kerala, India using mechanical
aspirators, light and sticky traps, both indoor and outdoor habitats,
for a period of one year. Deoxyribonucleic acid barcoding of samples
was performed targeting mitochondrial cytochrome oxidase I (COI)
gene and sequence generated was subjected to phylogenetic analysis.
Results: Sergentomyia (Neophlebotomus) ashwanii, a new sandfly
species is recorded and described in this communication. A single
row of 10-12 pointed teeth in the cibarium with 4-6 small denticles
or fore-teeth are the key characteristics that is distinctive from
other members of the subgenus Neophlebotomus. Mitochondrial
COI barcode followed by phylogenetic analysis of the nucleotide
sequence confirms that specimens of the species belong to the
same taxonomic group while the genetic distance (14.2%) with the
congeners established it to be a different species.
Conclusions: The Western Ghats' being an important biodiversity
hotspot and has dearth of systematic entomological surveys on
sandflies. The current study tried to fill the void and also report a
new sandfly species.
5. Application of next-generation sequencing in thalassemia screening: A systematic review and meta-analysis
Xingyi FANG ; Yanlin MA ; Yuanhua HUANG ; Xingyi FANG ; Yi GONG ; Yanlin MA ; Yuanhua HUANG ; Xingyi FANG ; Yi GONG ; Yanlin MA ; Yuanhua HUANG ; Yi GONG
Asian Pacific Journal of Tropical Medicine 2023;16(2):51-57
Objective: To evaluate the value of next-generation sequencing (NGS) in the prevention and management of thalassemia. Methods: A systematic search was performed in eight databases including China Biomedical Literature Database, Chinese National Knowledge Infrastructure, Chinese Scientific Journals Database, Wanfang database, PubMed, EMBASE, Web of Science, and Cochrane Library from the inception to 1 June 2022. Stata 17.0 and Review Manager 5.4 were used for the meta-analysis. Results: Nine studies containing 14794 participants were included in the meta-analysis. Compared with the routine genetic testing (including Gap-PCR and reverse dot blot), NGS had higher detection rates in screening thalassemia (RR 1.22, 95% CI 1.13-1.31, P<0.01), particularly for the α-thalassaemia mutation carriers (RR 1.24, 95% CI 1.07-1.44, P<0.01). However, no significant difference was found in the screening of β-thalassemia (RR 1.10, 95% CI 0.99-1.23, P>0.05). Conclusions: Compared with routine genetic testing, NGS had a higher detection rate in general, particularly in the detection of α-thalassemia.
6. Treatment outcomes and adverse drug reactions among patients with drug-resistant tuberculosis receiving all-oral, long-term regimens: First record viewing report from Pakistan
Hira ASLAM ; Usman RASOOL ; Asad OMAR ; Razia FATIMA ; Aashifa YAQOOB ; Waseem ULLAH ; Aamir KHAN ; Yusra KHAN ; Tauqeer MALLHI
Asian Pacific Journal of Tropical Medicine 2023;16(2):58-64
Objective: To assess the effectiveness and adverse drug reactions of all-oral regimens for patients with multidrug-resistant tuberculosis. Methods: This retrospective study was conducted at 10 Programmatic Management of Drug Resistant Tuberculosis sites in Punjab province of Pakistan. Patients receiving treatment for drug resistant tuberculosis from July 2019 to December 2020 with at least interim result i.e. 6th month culture conversion or final outcomes (cured, complete, lost to follow-up, failure, death) available, were included in the study. Data was extracted from electronic data management system. For the reporting and management of adverse drug events, active tuberculosis drug safety monitoring and management was implemented across all sites. All the data was analyzed using SPSS version 22. Results: Out of 947 drug resistant tuberculosis patients included in this study, 579 (68%) of the patients had final outcomes available. Of these, 384 (67.9%) successfully completed their treatment. Out of 368 (32%) patients who had their interim results available, all had their 6th month culture negative. Combining new medications was thought to result in serious adverse outcomes such as QT prolongation. However, this study did not record any severe adverse events among patients. Conclusions: All-oral regimens formulation guided by overall treatment effectiveness resulted in treatment outcomes comparable to those obtained with traditional injectable treatment.
7. Coagulation abnormalities and their relationship with bleeding manifestations in patients with dengue-A single center observational study
Govind PATEL ; Indu THANVI ; Mohammad NADEEM ; Rahul KANWARIA
Asian Pacific Journal of Tropical Medicine 2023;16(2):65-71
Objective: To evaluate coagulation abnormalities and their relationship with bleeding manifestations among patients with dengue. Methods: This observational study was conducted on 292 adult dengue patients who were admitted to a tertiary care hospital of Western India from July 2021 to June 2022. Coagulation tests including prothrombin time (PT), international normalized ratio (INR), activated partial thromboplastin time (aPTT), fibrinogen, and D-dimer were performed. Patients were monitored for bleeding manifestations. Results: Coagulation abnormalities were reported in 42.8% of the patients. Overall, prolonged aPTT was the most common coagulation abnormality (40.8%), followed by low fibrinogen (38.7%), raised D-dimer (31.2%), raised INR (26.0%) and prolonged PT (19.2%). Bleeding manifestations were present in 19.9% patients. PT, INR, aPTT and D-dimer levels were significantly higher (P<0.01) and fibrinogen level was significantly lower (P<0.001) in patients with bleeding compared to patients without bleeding. Patients with bleeding had a significantly higher rate of all coagulation abnormalities than patients without bleeding (P<0.01). Conclusions: Patients with bleeding showed a significantly higher frequency of coagulation abnormalities compared to patients without bleeding. Patients with dengue should be assessed for coagulation abnormalities.
8. Mutations in Plasmodium knowlesi Kelch protein 13 and the dihydropteroate synthase gene in clinical samples
Asian Pacific Journal of Tropical Medicine 2023;16(2):72-79
Objective: To determine the genetic diversity, natural selection and mutations in Plasmodium (P.) knowlesi drug resistant molecular markers Kelch 13 and dhps gene in clinical samples of Malaysia. Methods: P. knowlesi full-length gene sequences Kelch 13 gene (PkK13) from 40 samples and dhps gene from 30 samples originating from Malaysian Borneo were retrieved from public databases. Genetic diversity, natural selection, and phylogenetic analysis of gene sequences were analysed using DNAsp v5.10 and MEGA v5.2. Results: Seventy-two single nucleotide polymorphic sites (SNPs) across the full-length PkK13 gene (63 synonymous substitutions and 9 non-synonymous substitutions) with nucleotide diversity of π~0.005 was observed. Analysis of the full-length Pkdhps gene revealed 73 SNPs and π~0.006 (44 synonymous substitutions and 29 non-synonymous substitutions). A high number of haplotypes (PkK13; H=37 and Pkdhps; H=29) with haplotype diversity of Hd ~0.99 were found in both genes, indicating population expansion. Nine mutant alleles were identified in PkK13 amino acid alignment of which, 7 (Asp 3 Glu, Lys 50 Gln, Lys 53 Glu, Ser 123 Thr, Ser 127 Pro, Ser 149 Thr and Ala 169 Thr) were within the Plasmodium specific domain, 2 (VaI 372 Ile and Lys 424 Asn) were in the BTB/POZ domain and no mutation was observed within the kelch propeller domain. The 29 non-synonymous mutations in the Pkdhps gene were novel and only presented in exon 1 and 2. Conclusions: Monitoring the mutations from clinical samples collected from all states of Malaysia along with clinical efficacy studies will be necessary to determine the drug resistance in P. knowlesi.
9. Molecular epidemiology of piliated pneumococcal isolates at a major tertiary hospital in the Klang Valley, Malaysia
Nurul DZARALY ; Mohd DESA ; AbdulRahman MUTHANNA ; Nurul BAHARIN ; Nurshahira SULAIMAN ; Nurul RAHMAN ; Siti MASRI ; Niazlin TAIB ; Semiat YUSUFF ; Nurul RAHMAN ; Navindra PALANISAMY ; Zarizal SUHAILI ; Nor RAHMAN ; Tuan SOH ; Fatimah ABDULLAH8
Asian Pacific Journal of Tropical Medicine 2023;16(2):80-88
Objective: To characterise a collection of pili-carrying and none pili-carrying pneumococcal isolates of clinical origin for serotypes, antibiotic resistance and genotype. Methods: In total, 42 clinical isolates were collected between October 2017 and December 2019. Those isolates were analysed for antimicrobial susceptibility, serotype distribution, detection of pneumococcal virulence and pilus genes. Multilocus sequence typing was performed only for piliated isolates, followed by phylogenetic analysis. Results: The common isolation sites among the pneumococcal isolates were tracheal aspirate (28.6%), blood (26.2%), and sputum (23.8%). Fifty percent isolates were resistant to erythromycin, tetracycline (50.0%) and trimethoprim-sulfamethoxazole (43.0%). The most frequent were serotypes 19F (28.6%), 6A/B (23.8%) and 19A (14.3%). Piliated isolates were detected in a small proportion (33.3%); 64.3% were multidrug-resistant. ST320 was the prevalent sequence type among the piliated isolates and genetically related to the Pneumococcal Molecular Epidemiology Network clones Taiwan 19F -14 (CC271). In the phylogenetic analysis, some piliated isolates showed a close association having similar ST320, carrying serotype 19A and both pilus genes indicating their clonal spread. Conclusions: Pneumococcal lineages of piliated isolates have been globally disseminated and pili could have played a role in the spread of antibiotic resistant clones.
10. Long-term albendazole therapy for diffuse parenchymal neurocysticercosis in an immunocompetent patient: A case report
Paulus SUGIANTO ; Abdulloh MACHIN ; Wardah ISLAMIYAH ; Cindy CECILIA
Asian Pacific Journal of Tropical Medicine 2023;16(2):89-91
Rationale: Neurocysticercosis is a neglected tropical disease caused by the larvae of Taenia solium and may occur in immunocompetent people. We report a case of diffuse parenchymal neurocysticercosis mimicking tuberculous meningitis in an immunocompetent patient. Patient concerns: A 24-year-old immunocompetent woman presented with serial focal to generalized seizure, left body weakness, left abducens palsy, chronic cough, and body weight loss. She came from an area where she was unlikely to have contact with Taenia solium. Diagnosis: Diffuse parenchymal neurocysticercosis. Intervention: Valproic acid, dexamethasone and 15 months of albendazole therapy. Outcome: Complete recovery without any neurological sequelae. Lessons: Prolonged anthelminthic treatment may benefit neurocysticercosis patients with multiple cerebral parenchymal lesions.

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