1.Semi-supervised Long-tail Endoscopic Image Classification.
Run-Nan CAO ; Meng-Jie FANG ; Hai-Ling LI ; Jie TIAN ; Di DONG
Chinese Medical Sciences Journal 2022;37(3):171-180
Objective To explore the semi-supervised learning (SSL) algorithm for long-tail endoscopic image classification with limited annotations. Method We explored semi-supervised long-tail endoscopic image classification in HyperKvasir, the largest gastrointestinal public dataset with 23 diverse classes. Semi-supervised learning algorithm FixMatch was applied based on consistency regularization and pseudo-labeling. After splitting the training dataset and the test dataset at a ratio of 4:1, we sampled 20%, 50%, and 100% labeled training data to test the classification with limited annotations. Results The classification performance was evaluated by micro-average and macro-average evaluation metrics, with the Mathews correlation coefficient (MCC) as the overall evaluation. SSL algorithm improved the classification performance, with MCC increasing from 0.8761 to 0.8850, from 0.8983 to 0.8994, and from 0.9075 to 0.9095 with 20%, 50%, and 100% ratio of labeled training data, respectively. With a 20% ratio of labeled training data, SSL improved both the micro-average and macro-average classification performance; while for the ratio of 50% and 100%, SSL improved the micro-average performance but hurt macro-average performance. Through analyzing the confusion matrix and labeling bias in each class, we found that the pseudo-based SSL algorithm exacerbated the classifier's preference for the head class, resulting in improved performance in the head class and degenerated performance in the tail class. Conclusion SSL can improve the classification performance for semi-supervised long-tail endoscopic image classification, especially when the labeled data is extremely limited, which may benefit the building of assisted diagnosis systems for low-volume hospitals. However, the pseudo-labeling strategy may amplify the effect of class imbalance, which hurts the classification performance for the tail class.
Supervised Machine Learning
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Algorithms
2.The applied research on neural network filtrated by rough-set in insect taxonomy.
Ruiqing DU ; Qinglin WANG ; Guangliang LIU ; Zhengtian ZHANG ; Chen LI
Journal of Biomedical Engineering 2006;23(4):862-868
This article provides demonstrations and calculations, using rough-set theory and method, of the math-morphological features (MMFs), such as form parameter, lobation and sphericity, etc. drawn from 28 species of insects of the Hemiptera, Lepidoptera and Coleoptera based on their images. The results are compared with statistical analysis made by Zhao Hanqing, and also with the traditional classifications through the pattern recognition of neural network on the basis of the rough-set disposal. The result of the experiments showed that when used in categorical taxonomy, the importance of MMF was ranked from high to low: (roundness-likelihood. eccentricity) > (hot-hole number, sphericity, circularity) > (lobation, form parameter). The results of pattern recognition by neural network were completely identical with those of traditional classifications. Accordingly, the conclusion was that this theory applied in insect taxonomy was more idealistic compared with statistical analysis method, and it had great significance when used with rough-set neural network.
Algorithms
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Animals
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Fuzzy Logic
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Insecta
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classification
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Neural Networks (Computer)
3.Machine learning in medicine: what clinicians should know.
Jordan Zheng TING SIM ; Qi Wei FONG ; Weimin HUANG ; Cher Heng TAN
Singapore medical journal 2023;64(2):91-97
With the advent of artificial intelligence (AI), machines are increasingly being used to complete complicated tasks, yielding remarkable results. Machine learning (ML) is the most relevant subset of AI in medicine, which will soon become an integral part of our everyday practice. Therefore, physicians should acquaint themselves with ML and AI, and their role as an enabler rather than a competitor. Herein, we introduce basic concepts and terms used in AI and ML, and aim to demystify commonly used AI/ML algorithms such as learning methods including neural networks/deep learning, decision tree and application domain in computer vision and natural language processing through specific examples. We discuss how machines are already being used to augment the physician's decision-making process, and postulate the potential impact of ML on medical practice and medical research based on its current capabilities and known limitations. Moreover, we discuss the feasibility of full machine autonomy in medicine.
Humans
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Artificial Intelligence
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Machine Learning
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Algorithms
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Neural Networks, Computer
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Medicine
4.Medical image segmentation techniques.
Jing LI ; Shan'an ZHU ; He BIN
Journal of Biomedical Engineering 2006;23(4):891-894
Medical image segmentation is an important application of image segmentation. However it is the bottleneck that restrains medical image application in clinical practice. In this paper, the aim and significance of medical image segmentation are discussed, the development of medical image segmentation techniques is sketched, and a review of the medical image segmentation techniques is given.
Algorithms
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Cluster Analysis
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Fuzzy Logic
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Image Interpretation, Computer-Assisted
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methods
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Models, Statistical
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Neural Networks (Computer)
5.The state and development of cell image segmentation technology.
Yide MA ; Rolan DAI ; Lian LI ; Chenghu WU
Journal of Biomedical Engineering 2002;19(3):487-492
This paper describes the state and the development of the application of the modern and traditional image segmentation technology in cell slice image segmentation. It includes edge detection, regional segmentation, wavelet transform, fuzzy mathematics, artificial neural networks, morphological image segmentation and so on. At last, the paper summaries that it is difficult to generally segmentate any kind of biological cell slice image automatically because of the complex structure of cell and cell slice image is not even gray distributed. It should be pointed out that general automatic cell slice image segmentation will be achieved only if visual mathematics model corresponding to mammalian vision systems is setup entirely.
Algorithms
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Cytological Techniques
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Fuzzy Logic
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Image Processing, Computer-Assisted
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methods
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Neural Networks (Computer)
6.Similarity measures between vague sets and their application to electrocardiogram auto-recognition.
Li TANG ; Xiaoyun ZHANG ; Xiao TANG ; Zhiwen MO
Journal of Biomedical Engineering 2008;25(4):785-789
The similarity measures between Vague sets are one of the most important technologies in Vague sets, In this paper, the new similarity measures based on Huang Guoshun's related works are presented and applied in electrocardiogram auto-recognition. Based on medical requiresments, in this paper, the characteristic parameters of signals from Massachusettes Institute of Technology (database) have been picked up and studied with BP neural network. In the end, the electrocardiogram samples are classified with the use of those characteristic parameters. The result shows that the accuracy of recognition goes up to 99.04%.
Algorithms
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Electrocardiography
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methods
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Fuzzy Logic
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Humans
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Neural Networks (Computer)
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Pattern Recognition, Automated
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Signal Processing, Computer-Assisted
7.Chemical QSAR recognition by using fuzzy min-max neural-network.
Yongwu LI ; Zhiqian YE ; Jinfang LU
Journal of Biomedical Engineering 2002;19(3):449-451
By using the fuzzy min-max neural network, the quantitative structure-activity relationship (QSAR) of mutagenicity is studied. With the established QSAR model, the mutagenicity is predicted and the results showed that QASR is superior to linear-regression model. Further discussion on the models and the results is presented in this paper.
Algorithms
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Cluster Analysis
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Fuzzy Logic
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Models, Chemical
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Neural Networks (Computer)
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Quantitative Structure-Activity Relationship
8.Fuzzy control of the physical training intensity based on neural-network.
Weiming DENG ; Xuechuan SUN ; Xiaoyan FAN
Journal of Biomedical Engineering 2003;20(4):700-703
Using computer technique, artificial neural network and fuzzy control theory, we have explored a real-time control method for the athlete's physical workload intensity in order that the goal of physical training can be reached effectively in accordance to the exercise plan. The technique could be useful for improving the efficiency of scientific physical training.
Algorithms
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Exercise Tolerance
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Fuzzy Logic
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Humans
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Monitoring, Physiologic
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methods
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Neural Networks (Computer)
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Sports
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physiology
9.A review of brain-like spiking neural network and its neuromorphic chip research.
Huigang ZHANG ; Guizhi XU ; Jiarong GUO ; Lei GUO
Journal of Biomedical Engineering 2021;38(5):986-994
Under the current situation of the rapid development of brain-like artificial intelligence and the increasingly complex electromagnetic environment, the most bionic and anti-interference spiking neural network has shown great potential in computing speed, real-time information processing, and spatiotemporal data processing. Spiking neural network is the core part of brain-like artificial intelligence, which realizes brain-like computing by simulating the structure of biological neural network and the way of information transmission. This article first summarizes the advantages and disadvantages of the five models, and analyzes the characteristics of several network topologies. Then, it summarizes the spiking neural network algorithms. The unsupervised learning based on spike timing dependent plasticity (STDP) rules and four types of supervised learning algorithms are analyzed. Finally, the research on brain-like neuromorphic chips at home and abroad are reviewed. This paper aims to provide learning ideas and research directions for new colleagues in the field of spiking neural network.
Algorithms
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Artificial Intelligence
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Brain
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Neural Networks, Computer
10.Research on gait recognition and prediction based on optimized machine learning algorithm.
Jingwei GAO ; Chao MA ; Hong SU ; Shaohong WANG ; Xiaoli XU ; Jie YAO
Journal of Biomedical Engineering 2022;39(1):103-111
Aiming at the problems of individual differences in the asynchrony process of human lower limbs and random changes in stride during walking, this paper proposes a method for gait recognition and prediction using motion posture signals. The research adopts an optimized gated recurrent unit (GRU) network algorithm based on immune particle swarm optimization (IPSO) to establish a network model that takes human body posture change data as the input, and the posture change data and accuracy of the next stage as the output, to realize the prediction of human body posture changes. This paper first clearly outlines the process of IPSO's optimization of the GRU algorithm. It collects human body posture change data of multiple subjects performing flat-land walking, squatting, and sitting leg flexion and extension movements. Then, through comparative analysis of IPSO optimized recurrent neural network (RNN), long short-term memory (LSTM) network, GRU network classification and prediction, the effectiveness of the built model is verified. The test results show that the optimized algorithm can better predict the changes in human posture. Among them, the root mean square error (RMSE) of flat-land walking and squatting can reach the accuracy of 10 -3, and the RMSE of sitting leg flexion and extension can reach the accuracy of 10 -2. The R 2 value of various actions can reach above 0.966. The above research results show that the optimized algorithm can be applied to realize human gait movement evaluation and gait trend prediction in rehabilitation treatment, as well as in the design of artificial limbs and lower limb rehabilitation equipment, which provide a reference for future research to improve patients' limb function, activity level, and life independence ability.
Algorithms
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Gait
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Humans
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Machine Learning
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Neural Networks, Computer
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Walking